EMAN::nnSSNR_Reconstructor Class Reference

#include <reconstructor.h>

Inheritance diagram for EMAN::nnSSNR_Reconstructor:

Inheritance graph
[legend]
Collaboration diagram for EMAN::nnSSNR_Reconstructor:

Collaboration graph
[legend]

List of all members.

Public Member Functions

 nnSSNR_Reconstructor ()
 nnSSNR_Reconstructor (const string &symmetry, int size, int npad)
 ~nnSSNR_Reconstructor ()
virtual void setup ()
 Initialize the reconstructor.
virtual int insert_slice (const EMData *const slice, const Transform &euler, const float weight=1.0)
 Insert an image slice to the reconstructor.
virtual EMData * finish (bool doift=true)
 Finish reconstruction and return the complete model.
virtual string get_name () const
 Get the unique name of this class (especially for factory based instantiation access).
virtual string get_desc () const
 Get a clear, concise description of this class.
virtual TypeDict get_param_types () const
void setup (const string &symmetry, int size, int npad)
int insert_padfft_slice (EMData *padded, const Transform &trans, int mult=1)

Static Public Member Functions

static Reconstructor * NEW ()

Static Public Attributes

static const string NAME = "nnSSNR"

Private Member Functions

void buildFFTVolume ()
void buildNormVolume ()
void buildNorm2Volume ()

Private Attributes

EMData * m_volume
EMData * m_wptr
EMData * m_wptr2
EMData * m_result
bool m_delete_volume
bool m_delete_weight
bool m_delete_weight2
string m_symmetry
int m_weighting
int m_vnx
int m_vny
int m_vnz
int m_npad
int m_nsym
int m_vnzp
int m_vnyp
int m_vnxp
int m_vnzc
int m_vnyc
int m_vnxc
float m_wghta
float m_wghtb

Detailed Description

Definition at line 882 of file reconstructor.h.

Constructor & Destructor Documentation

nnSSNR_Reconstructor::nnSSNR_Reconstructor (  ) 

Definition at line 2396 of file reconstructor.cpp.

References m_result, m_volume, m_wptr, and m_wptr2.

Referenced by NEW().

02397 {
02398         m_volume = NULL;
02399         m_wptr   = NULL;
02400         m_wptr2  = NULL;
02401         m_result = NULL;
02402 }

nnSSNR_Reconstructor::nnSSNR_Reconstructor ( const string &  symmetry,
int  size,
int  npad 
)

Definition at line 2404 of file reconstructor.cpp.

References m_result, m_volume, m_wptr, m_wptr2, and setup().

02405 {
02406         m_volume = NULL;
02407         m_wptr   = NULL;
02408         m_wptr2  = NULL;
02409         m_result = NULL;
02410 
02411         setup( symmetry, size, npad );
02412 }

nnSSNR_Reconstructor::~nnSSNR_Reconstructor (  ) 

Definition at line 2414 of file reconstructor.cpp.

References checked_delete(), m_delete_volume, m_delete_weight, m_delete_weight2, m_result, m_volume, m_wptr, and m_wptr2.

02415 {
02416         if( m_delete_volume ) checked_delete(m_volume);
02417 
02418         if( m_delete_weight ) checked_delete( m_wptr );
02419 
02420         if( m_delete_weight2 ) checked_delete( m_wptr2 );
02421 
02422         checked_delete( m_result );
02423 }

Member Function Documentation

void nnSSNR_Reconstructor::setup (  )  [virtual]

Initialize the reconstructor.

Implements EMAN::Reconstructor.

Definition at line 2425 of file reconstructor.cpp.

References EMAN::Dict::has_key(), EMAN::FactoryBase::params, and EMAN::Gatan::to_str().

Referenced by nnSSNR_Reconstructor().

02426 {
02427         int size = params["size"];
02428         int npad = params["npad"];
02429 
02430         string symmetry;
02431         if( params.has_key("symmetry") ) symmetry = params["symmetry"].to_str();
02432         else                             symmetry = "c1";
02433 
02434         setup( symmetry, size, npad );
02435 }

int nnSSNR_Reconstructor::insert_slice ( const EMData *const   slice,
const Transform &  euler,
const float  weight = 1.0 
) [virtual]

Insert an image slice to the reconstructor.

To insert multiple image slices, call this function multiple times.

Parameters:
slice Image slice.
euler Euler angle of this image slice.
weight A weighting factor for this slice, generally the number of particles in a class-average. May be ignored by some reconstructors
Returns:
0 if OK. 1 if error.

Reimplemented from EMAN::Reconstructor.

Definition at line 2518 of file reconstructor.cpp.

References Assert, checked_delete(), EMAN::EMData::get_attr_default(), EMAN::EMData::get_xsize(), EMAN::EMData::get_ysize(), insert_padfft_slice(), LOGERR, m_npad, m_vnx, mult(), and EMAN::padfft_slice().

02518                                                                                                         {
02519         // sanity checks
02520         if (!slice) {
02521                 LOGERR("try to insert NULL slice");
02522                 return 1;
02523         }
02524 
02525         int padffted=slice->get_attr_default( "padffted", 0 );
02526 
02527         if ( padffted==0 && (slice->get_xsize()!=slice->get_ysize() || slice->get_xsize()!=m_vnx)  ) {
02528                 // FIXME: Why doesn't this throw an exception?
02529                 LOGERR("Tried to insert a slice that has wrong size.");
02530                 return 1;
02531         }
02532 
02533         EMData* padfft = NULL;
02534 
02535         if( padffted != 0 ) padfft = new EMData(*slice);
02536         else                padfft = padfft_slice( slice, t, m_npad );
02537 
02538         int mult = slice->get_attr_default("mult", 1);
02539 
02540         Assert( mult > 0 );
02541         insert_padfft_slice( padfft, t, mult );
02542 
02543         checked_delete( padfft );
02544         return 0;
02545 }

EMData * nnSSNR_Reconstructor::finish ( bool  doift = true  )  [virtual]

Finish reconstruction and return the complete model.

Parameters:
doift A flag indicating whether the returned object should be guaranteed to be in real-space (true) or should be left in whatever space the reconstructor generated
Returns:
The result 3D model.

Reimplemented from EMAN::Reconstructor.

Definition at line 2560 of file reconstructor.cpp.

References abs, EMAN::EMData::cmplx(), ESTIMATE, m_vnxc, m_vnxp, m_vnyc, m_vnyp, m_vnzc, m_vnzp, m_volume, m_weighting, m_wghta, m_wptr, m_wptr2, max, max3d(), nn(), norm(), EMAN::FactoryBase::params, EMAN::Util::round(), EMAN::EMData::set_complex(), EMAN::EMData::set_fftodd(), EMAN::EMData::set_fftpad(), EMAN::EMData::set_nxc(), EMAN::EMData::set_ri(), EMAN::EMData::set_size(), sqrt(), EMAN::EMData::symplane1(), EMAN::EMData::to_zero(), and EMAN::EMData::update().

02561 {
02562 /*
02563   I changed the code on 05/15 so it only returns variance.
02564   Lines commented out are marked by //#
02565   The version prior to the currect changes is r1.190
02566   PAP
02567 */
02568         int kz, ky;
02569         //#int iix, iiy, iiz;
02570         int box = 7;
02571         int kc = (box-1)/2;
02572         float alpha = 0.0;
02573         float argx, argy, argz;
02574         vector< float > pow_a( 3*kc+1, 1.0 );
02575         float w = params["w"];
02576         EMData* SSNR = params["SSNR"];
02577         //#EMData* vol_ssnr = new EMData();
02578         //#vol_ssnr->set_size(m_vnxp, m_vnyp, m_vnzp);
02579         //#vol_ssnr->to_zero();
02580         //#  new line follow
02581         EMData* vol_ssnr = new EMData();
02582         vol_ssnr->set_size(m_vnxp+ 2 - m_vnxp%2, m_vnyp ,m_vnzp);
02583         vol_ssnr->to_zero();
02584         if ( m_vnxp % 2 == 0 ) vol_ssnr->set_fftodd(0);
02585         else                   vol_ssnr->set_fftodd(1);
02586         vol_ssnr->set_nxc(m_vnxc);
02587         vol_ssnr->set_complex(true);
02588         vol_ssnr->set_ri(true);
02589         vol_ssnr->set_fftpad(false);
02590         //#
02591 
02592         float dx2 = 1.0f/float(m_vnxc)/float(m_vnxc);
02593         float dy2 = 1.0f/float(m_vnyc)/float(m_vnyc);
02594 #ifdef _WIN32
02595         float dz2 = 1.0f/_cpp_max(float(m_vnzc),1.0f)/_cpp_max(float(m_vnzc),1.0f);
02596         int  inc = Util::round(float(_cpp_max(_cpp_max(m_vnxc,m_vnyc),m_vnzc))/w);
02597 #else
02598         float dz2 = 1.0f/std::max(float(m_vnzc),1.0f)/std::max(float(m_vnzc),1.0f);
02599         int  inc = Util::round(float(std::max(std::max(m_vnxc,m_vnyc),m_vnzc))/w);
02600 #endif  //_WIN32
02601         SSNR->set_size(inc+1,4,1);
02602 
02603         float *nom    = new float[inc+1];
02604         float *denom  = new float[inc+1];
02605         int  *nn     = new int[inc+1];
02606         int  *ka     = new int[inc+1];
02607         float wght = 1.0f;
02608         for (int i = 0; i <= inc; i++) {
02609                 nom[i] = 0.0f;
02610                 denom[i] = 0.0f;
02611                 nn[i] = 0;
02612                 ka[i] = 0;
02613         }
02614 
02615         m_volume->symplane1(m_wptr, m_wptr2);
02616 
02617         if ( m_weighting == ESTIMATE ) {
02618                 int vol = box*box*box;
02619                 for( unsigned int i=1; i < pow_a.size(); ++i ) pow_a[i] = pow_a[i-1] * exp(m_wghta);
02620                 pow_a[3*kc] = 0.0;
02621                 float max = max3d( kc, pow_a );
02622                 alpha = ( 1.0f - 1.0f/(float)vol ) / max;
02623         }
02624 
02625         for (int iz = 1; iz <= m_vnzp; iz++) {
02626                 if ( iz-1 > m_vnzc ) kz = iz-1-m_vnzp; else kz = iz-1;
02627                 argz = float(kz*kz)*dz2;
02628                 for (int iy = 1; iy <= m_vnyp; iy++) {
02629                         if ( iy-1 > m_vnyc ) ky = iy-1-m_vnyp; else ky = iy-1;
02630                         argy = argz + float(ky*ky)*dy2;
02631                         for (int ix = 0; ix <= m_vnxc; ix++) {
02632                                 float Kn = (*m_wptr)(ix,iy,iz);
02633                                 argx = std::sqrt(argy + float(ix*ix)*dx2);
02634                                 int r = Util::round(float(inc)*argx);
02635                                 if ( r >= 0 && Kn > 4.5f ) {
02636                                         if ( m_weighting == ESTIMATE ) {
02637                                                 int cx = ix;
02638                                                 int cy = (iy<=m_vnyc) ? iy - 1 : iy - 1 - m_vnyp;
02639                                                 int cz = (iz<=m_vnzc) ? iz - 1 : iz - 1 - m_vnzp;
02640 
02641                                                 float sum = 0.0;
02642                                                 for( int ii = -kc; ii <= kc; ++ii ) {
02643                                                         int nbrcx = cx + ii;
02644                                                         if( nbrcx >= m_vnxc ) continue;
02645                                                     for ( int jj= -kc; jj <= kc; ++jj ) {
02646                                                                 int nbrcy = cy + jj;
02647                                                                 if( nbrcy <= -m_vnyc || nbrcy >= m_vnyc ) continue;
02648                                                                 for( int kk = -kc; kk <= kc; ++kk ) {
02649                                                                         int nbrcz = cz + jj;
02650                                                                         if ( nbrcz <= -m_vnyc || nbrcz >= m_vnyc ) continue;
02651                                                                         if( nbrcx < 0 ) {
02652                                                                                 nbrcx = -nbrcx;
02653                                                                                 nbrcy = -nbrcy;
02654                                                                                 nbrcz = -nbrcz;
02655                                                                         }
02656                                                                         int nbrix = nbrcx;
02657                                                                         int nbriy = nbrcy >= 0 ? nbrcy + 1 : nbrcy + 1 + m_vnyp;
02658                                                                         int nbriz = nbrcz >= 0 ? nbrcz + 1 : nbrcz + 1 + m_vnzp;
02659                                                                         if( (*m_wptr)( nbrix, nbriy, nbriz ) == 0 ) {
02660                                                                                 int c = 3*kc+1 - std::abs(ii) - std::abs(jj) - std::abs(kk);
02661                                                                                 sum = sum + pow_a[c];
02662                                                                         }
02663                                                                 }
02664                                                         }
02665                                                 }
02666                                                 wght = 1.0f / ( 1.0f - alpha * sum );
02667                                         } // end of ( m_weighting == ESTIMATE )
02668                                         float nominator = std::norm(m_volume->cmplx(ix,iy,iz))/Kn;
02669                                         float denominator = ((*m_wptr2)(ix,iy,iz)-nominator)/(Kn-1.0f);
02670                                         // Skip Friedel related values
02671                                         if( (ix>0 || (kz>=0 && (ky>=0 || kz!=0)))) {
02672                                                 if ( r <= inc ) {
02673                                                         nom[r]   += nominator*wght;
02674                                                         denom[r] += denominator/Kn*wght;
02675                                                         nn[r]    += 2;
02676                                                         ka[r]    += int(Kn);
02677                                                 }
02678 /*
02679 #ifdef  _WIN32
02680                                                 //#float  tmp = _cpp_max(nominator/denominator/Kn-1.0f,0.0f);
02681 #else
02682                                                 //#float  tmp = std::max(nominator/denominator/Kn-1.0f,0.0f);
02683 #endif  //_WIN32
02684                                                 //  Create SSNR as a 3D array (-n/2:n/2+n%2-1)
02685                                                 iix = m_vnxc + ix; iiy = m_vnyc + ky; iiz = m_vnzc + kz;
02686                                                 if( iix >= 0 && iix < m_vnxp && iiy >= 0 && iiy < m_vnyp && iiz >= 0 && iiz < m_vnzp )
02687                                                         (*vol_ssnr)(iix, iiy, iiz) = tmp;
02688                                                 // Friedel part
02689                                                 iix = m_vnxc - ix; iiy = m_vnyc - ky; iiz = m_vnzc - kz;
02690                                                 if( iix >= 0 && iix < m_vnxp && iiy >= 0 && iiy < m_vnyp && iiz >= 0 && iiz < m_vnzp )
02691                                                         (*vol_ssnr)(iix, iiy, iiz) = tmp;
02692 */
02693 
02694                                         }
02695                                         (*vol_ssnr)(2*ix, iy-1, iz-1) = denominator*wght;
02696                                         //(*vol_ssnr)(2*ix, iy-1, iz-1) =  real(m_volume->cmplx(ix,iy,iz))*wght/Kn;
02697                                         //(*vol_ssnr)(2*ix+1, iy-1, iz-1) = imag(m_volume->cmplx(ix,iy,iz))*wght/Kn;
02698                                 } // end of Kn>4.5
02699                         }
02700                 }
02701         }
02702 
02703         for (int i = 0; i <= inc; i++)  {
02704                 (*SSNR)(i,0,0) = nom[i];  
02705                 (*SSNR)(i,1,0) = denom[i];    // variance
02706                 (*SSNR)(i,2,0) = static_cast<float>(nn[i]);
02707                 (*SSNR)(i,3,0) = static_cast<float>(ka[i]);
02708         }
02709         vol_ssnr->update();
02710         return vol_ssnr;
02711 }

virtual string EMAN::nnSSNR_Reconstructor::get_name (  )  const [inline, virtual]

Get the unique name of this class (especially for factory based instantiation access).

Returns:
the unique name of this class

Implements EMAN::FactoryBase.

Definition at line 906 of file reconstructor.h.

References NAME.

00907                 {
00908                         return NAME;
00909                 }

virtual string EMAN::nnSSNR_Reconstructor::get_desc (  )  const [inline, virtual]

Get a clear, concise description of this class.

Returns:
a clear, concise description of this class

Implements EMAN::FactoryBase.

Definition at line 911 of file reconstructor.h.

00912                 {
00913                         return "Reconstruction by nearest neighbor with 3D SSNR";
00914                 }

static Reconstructor* EMAN::nnSSNR_Reconstructor::NEW (  )  [inline, static]

Definition at line 916 of file reconstructor.h.

References nnSSNR_Reconstructor().

00917                 {
00918                         return new nnSSNR_Reconstructor();
00919                 }

virtual TypeDict EMAN::nnSSNR_Reconstructor::get_param_types (  )  const [inline, virtual]

Returns:
a TypeDict defining and describing the feasible parameters of this class

Implements EMAN::FactoryBase.

Definition at line 921 of file reconstructor.h.

References EMAN::EMObject::EMDATA, EMAN::EMObject::FLOAT, EMAN::EMObject::INT, EMAN::TypeDict::put(), and EMAN::EMObject::STRING.

00922                 {
00923                         TypeDict d;
00924                         d.put("size", EMObject::INT);
00925                         d.put("npad", EMObject::INT);
00926                         d.put("symmetry", EMObject::STRING);
00927                         d.put("fftvol", EMObject::EMDATA);
00928                         d.put("weight", EMObject::EMDATA);
00929                         d.put("weight2", EMObject::EMDATA);
00930                         d.put("SSNR", EMObject::EMDATA);
00931                         d.put("w", EMObject::FLOAT);
00932                         return d;
00933                 }

void nnSSNR_Reconstructor::setup ( const string &  symmetry,
int  size,
int  npad 
)

Definition at line 2437 of file reconstructor.cpp.

References buildFFTVolume(), buildNorm2Volume(), buildNormVolume(), ESTIMATE, EMAN::Transform::get_nsym(), m_npad, m_nsym, m_symmetry, m_vnx, m_vnxc, m_vnxp, m_vny, m_vnyc, m_vnyp, m_vnz, m_vnzc, m_vnzp, m_weighting, m_wghta, and m_wghtb.

02438 {
02439 
02440         m_weighting = ESTIMATE;
02441         m_wghta = 0.2f;
02442         m_wghtb = 0.004f;
02443 
02444         m_symmetry = symmetry;
02445         m_npad = npad;
02446         m_nsym = Transform::get_nsym(m_symmetry);
02447 
02448         m_vnx = size;
02449         m_vny = size;
02450         m_vnz = size;
02451 
02452         m_vnxp = size*npad;
02453         m_vnyp = size*npad;
02454         m_vnzp = size*npad;
02455 
02456         m_vnxc = m_vnxp/2;
02457         m_vnyc = m_vnyp/2;
02458         m_vnzc = m_vnzp/2;
02459 
02460         buildFFTVolume();
02461         buildNormVolume();
02462         buildNorm2Volume();
02463 
02464 }

int nnSSNR_Reconstructor::insert_padfft_slice ( EMData *  padded,
const Transform &  trans,
int  mult = 1 
)

Definition at line 2547 of file reconstructor.cpp.

References Assert, EMAN::Transform::get_sym(), m_nsym, m_symmetry, m_volume, m_wptr, m_wptr2, and EMAN::EMData::nn_SSNR().

Referenced by insert_slice().

02548 {
02549         Assert( padfft != NULL );
02550         // insert slice for all symmetry related positions
02551         for (int isym=0; isym < m_nsym; isym++) {
02552                 Transform tsym = t.get_sym(m_symmetry, isym);
02553                 m_volume->nn_SSNR( m_wptr, m_wptr2, padfft, tsym, mult);
02554         }
02555         return 0;
02556 }

void nnSSNR_Reconstructor::buildFFTVolume (  )  [private]

Definition at line 2466 of file reconstructor.cpp.

References EMAN::Dict::has_key(), m_delete_volume, m_npad, m_vnxc, m_vnxp, m_vnyp, m_vnzp, m_volume, EMAN::FactoryBase::params, EMAN::EMData::set_array_offsets(), EMAN::EMData::set_attr(), EMAN::EMData::set_complex(), EMAN::EMData::set_fftodd(), EMAN::EMData::set_fftpad(), EMAN::EMData::set_nxc(), EMAN::EMData::set_ri(), EMAN::EMData::set_size(), and EMAN::EMData::to_zero().

Referenced by setup().

02466                                           {
02467 
02468         if( params.has_key("fftvol") ) {
02469                 m_volume = params["fftvol"]; /* volume should be defined in python when PMI is turned on*/
02470                 m_delete_volume = false;
02471         } else {
02472                 m_volume = new EMData();
02473                 m_delete_volume = true;
02474         }
02475         m_volume->set_size(m_vnxp+ 2 - m_vnxp%2,m_vnyp,m_vnzp);
02476         m_volume->to_zero();
02477         if ( m_vnxp % 2 == 0 ) m_volume->set_fftodd(0);
02478         else                   m_volume->set_fftodd(1);
02479 
02480         m_volume->set_nxc(m_vnxc);
02481         m_volume->set_complex(true);
02482         m_volume->set_ri(true);
02483         m_volume->set_fftpad(true);
02484         m_volume->set_attr("npad", m_npad);
02485         m_volume->set_array_offsets(0,1,1);
02486 }

void nnSSNR_Reconstructor::buildNormVolume (  )  [private]

Definition at line 2488 of file reconstructor.cpp.

References EMAN::Dict::has_key(), m_delete_weight, m_vnxc, m_vnyp, m_vnzp, m_wptr, EMAN::FactoryBase::params, EMAN::EMData::set_array_offsets(), EMAN::EMData::set_size(), and EMAN::EMData::to_zero().

Referenced by setup().

02488                                            {
02489         if( params.has_key("weight") ) {
02490                 m_wptr          = params["weight"];
02491                 m_delete_weight = false;
02492         } else {
02493                 m_wptr = new EMData();
02494                 m_delete_weight = true;
02495         }
02496 
02497         m_wptr->set_size(m_vnxc+1,m_vnyp,m_vnzp);
02498         m_wptr->to_zero();
02499 
02500         m_wptr->set_array_offsets(0,1,1);
02501 }

void nnSSNR_Reconstructor::buildNorm2Volume (  )  [private]

Definition at line 2503 of file reconstructor.cpp.

References EMAN::Dict::has_key(), m_delete_weight2, m_vnxc, m_vnyp, m_vnzp, m_wptr2, EMAN::FactoryBase::params, EMAN::EMData::set_array_offsets(), EMAN::EMData::set_size(), and EMAN::EMData::to_zero().

Referenced by setup().

02503                                             {
02504 
02505         if( params.has_key("weight2") ) {
02506                 m_wptr2          = params["weight2"];
02507                 m_delete_weight2 = false;
02508         } else {
02509                 m_wptr2 = new EMData();
02510                 m_delete_weight2 = true;
02511         }
02512         m_wptr2->set_size(m_vnxc+1,m_vnyp,m_vnzp);
02513         m_wptr2->to_zero();
02514         m_wptr2->set_array_offsets(0,1,1);
02515 }

Member Data Documentation

const string nnSSNR_Reconstructor::NAME = "nnSSNR" [static]

Definition at line 939 of file reconstructor.h.

Referenced by get_name().

EMData* EMAN::nnSSNR_Reconstructor::m_volume [private]

Definition at line 942 of file reconstructor.h.

Referenced by buildFFTVolume(), finish(), insert_padfft_slice(), nnSSNR_Reconstructor(), and ~nnSSNR_Reconstructor().

EMData* EMAN::nnSSNR_Reconstructor::m_wptr [private]

Definition at line 943 of file reconstructor.h.

Referenced by buildNormVolume(), finish(), insert_padfft_slice(), nnSSNR_Reconstructor(), and ~nnSSNR_Reconstructor().

EMData* EMAN::nnSSNR_Reconstructor::m_wptr2 [private]

Definition at line 944 of file reconstructor.h.

Referenced by buildNorm2Volume(), finish(), insert_padfft_slice(), nnSSNR_Reconstructor(), and ~nnSSNR_Reconstructor().

EMData* EMAN::nnSSNR_Reconstructor::m_result [private]

Definition at line 945 of file reconstructor.h.

Referenced by nnSSNR_Reconstructor(), and ~nnSSNR_Reconstructor().

bool EMAN::nnSSNR_Reconstructor::m_delete_volume [private]

Definition at line 946 of file reconstructor.h.

Referenced by buildFFTVolume(), and ~nnSSNR_Reconstructor().

bool EMAN::nnSSNR_Reconstructor::m_delete_weight [private]

Definition at line 947 of file reconstructor.h.

Referenced by buildNormVolume(), and ~nnSSNR_Reconstructor().

bool EMAN::nnSSNR_Reconstructor::m_delete_weight2 [private]

Definition at line 948 of file reconstructor.h.

Referenced by buildNorm2Volume(), and ~nnSSNR_Reconstructor().

string EMAN::nnSSNR_Reconstructor::m_symmetry [private]

Definition at line 949 of file reconstructor.h.

Referenced by insert_padfft_slice(), and setup().

int EMAN::nnSSNR_Reconstructor::m_weighting [private]

Definition at line 950 of file reconstructor.h.

Referenced by finish(), and setup().

int EMAN::nnSSNR_Reconstructor::m_vnx [private]

Definition at line 951 of file reconstructor.h.

Referenced by insert_slice(), and setup().

int EMAN::nnSSNR_Reconstructor::m_vny [private]

Definition at line 951 of file reconstructor.h.

Referenced by setup().

int EMAN::nnSSNR_Reconstructor::m_vnz [private]

Definition at line 951 of file reconstructor.h.

Referenced by setup().

int EMAN::nnSSNR_Reconstructor::m_npad [private]

Definition at line 952 of file reconstructor.h.

Referenced by buildFFTVolume(), insert_slice(), and setup().

int EMAN::nnSSNR_Reconstructor::m_nsym [private]

Definition at line 953 of file reconstructor.h.

Referenced by insert_padfft_slice(), and setup().

int EMAN::nnSSNR_Reconstructor::m_vnzp [private]

Definition at line 954 of file reconstructor.h.

Referenced by buildFFTVolume(), buildNorm2Volume(), buildNormVolume(), finish(), and setup().

int EMAN::nnSSNR_Reconstructor::m_vnyp [private]

Definition at line 954 of file reconstructor.h.

Referenced by buildFFTVolume(), buildNorm2Volume(), buildNormVolume(), finish(), and setup().

int EMAN::nnSSNR_Reconstructor::m_vnxp [private]

Definition at line 954 of file reconstructor.h.

Referenced by buildFFTVolume(), finish(), and setup().

int EMAN::nnSSNR_Reconstructor::m_vnzc [private]

Definition at line 955 of file reconstructor.h.

Referenced by finish(), and setup().

int EMAN::nnSSNR_Reconstructor::m_vnyc [private]

Definition at line 955 of file reconstructor.h.

Referenced by finish(), and setup().

int EMAN::nnSSNR_Reconstructor::m_vnxc [private]

Definition at line 955 of file reconstructor.h.

Referenced by buildFFTVolume(), buildNorm2Volume(), buildNormVolume(), finish(), and setup().

float EMAN::nnSSNR_Reconstructor::m_wghta [private]

Definition at line 959 of file reconstructor.h.

Referenced by finish(), and setup().

float EMAN::nnSSNR_Reconstructor::m_wghtb [private]

Definition at line 960 of file reconstructor.h.

Referenced by setup().

The documentation for this class was generated from the following files:
Generated on Sun Mar 21 02:20:38 2010 for EMAN2 by  doxygen 1.5.6