• EMAN2
• Library

Documentation for Python or C++ Programmers

• EMAN2 Python Programming Style Guide

• EMAN2 python programming quickstart

• EMAN2 C++ programming quickstart

• EMAN2 data storage, format conversion and local database

• Parameters/Metadata appearing in EMData attributes (and stored on disk with the image), accessed with get_attr and set_attr

• Parameters/Metadata for applications, not associated with a specific image, stored in bdb:project

• Using FTGL in python/EMAN2

• Using the Transform object in python/EMAN2

• The EMData class and CUDA

• Abstract factories in python/EMAN2

• Limited Table of translations from EMAN1 functions -> EMAN2

• Image Formats in EMAN2

• Documentation for the EMAN2 Python code

• Autogenerated Python/C++ Documentation (Doxygen)

  • There are a LOT of classes in the automatic docs. Basic images are represented by the EMData class
  • The EMData methods process, cmp, align, and project are modular methods with many available functions. Use dump_processors(), dump_cmps(), etc.
  • There are a few classes like analyzers and reconstructors which are not methods of EMData
  • Many utility functions are static members of EMUtil

Extend EMAN2's functionality by adding new algorithms or linking to external software

• How to add new capabilities to EMAN2