Results 76 - 100 of 121 results out of about 4269 pages. (1.80 seconds)
- EMAN2/Programs/e2refinetofrealign . . . 7 matches
- ... e2refinetofrealign =
=== Information ===
Note - this program is normally run via the EMAN2 [[EMAN2/Programs/e2projectmanager|Project Manager]].
This program will take various f...
- EMAN2/Programs/e2display . . . 7 matches
- ...|[[EMAN2/Programs/emselector|EMAN2 File Browser]] | [[EMAN2/Programs/emimage2d|2D Display]] | [[EMAN2/Programs/emimagemx|2D Stack Display]] | [[EMAN2/Programs/emimage3d|3D Image D...
- Eman2ImageMetadata . . . 6 matches
- ...== Metadata in EMAN2 ==
Most metadata in EMAN2 is stored either in JSON files (human readable & editable structured text files) or in the headers of the images themselves. These a...
- EMAN2/e2gmm . . . 6 matches
- ...ons'''
* '''THE e2gmm program is under active development. STRONGLY encourage using an EMAN2 snapshot or source version dated 12/2022 or later. Even with a current version you may...
- EMAN2/Programs/e2refinetorelion3d . . . 6 matches
- ...= e2refinetorelion3d =
=== Information ===
This program is normally run via the EMAN2 [[EMAN2/Programs/e2projectmanager|Project Manager]].
''e2refinetorelion3d.py'' is run after...
- EMAN2/Programs/e2bdb . . . 6 matches
- ...= e2bdb.py =
This is the main command-line program for manipulating EMAN2 BDB database files. Please read more about the
[[Eman2DataStorage|BDB database]] itself.
||-c||--cleanu...
- EMAN2/Parallel/Threaded . . . 6 matches
- ...=== Threaded Parallelism in EMAN2 ===
Most modern computers have at a minimum 2 'cores'. A decade ago this would have been called 2 CPUs, however, now you may still have 2 physica...
- EMAN2/Install/CondaInstall . . . 6 matches
- ...=== Conda Installation of eman-dev ===
1. [[EMAN2/Install/SourceInstall#Initial_Setup_.28one_time.29|Install Miniconda and mamba]].
1. Run
{{{#!highlight bash
mamba create -n ...
- Eman2PythonDoc/emboxerbase . . . 5 matches
- ...[[Eman2PythonDoc|EMAN2 Python Documentation Home]]
= emboxerbase.py =
~+'''__Note: This documentation is in its very early stages and may not be reliable!__'''+~
<<TableOfConte...
- EMAN2/Tutorials/RotateTranslate . . . 5 matches
- ...a (image) objects. A very thorough explanation of using the Transform is presented in [[Eman2TransformInPython|Using the EMAN2 Transform class]] and you are encouraged to at least ...
- EMAN2/TomoSymmetry . . . 5 matches
- ...izing/classifying not entire symmetric particles, but on an individual subunit basis.
EMAN2 has 2 primary methods to permit this in the new subtomogram averaging pipeline (using ...
- EMAN2/Modular/Overview . . . 5 matches
- ...== Overview of modular functions in EMAN2 ==
EMAN2's modular function interface is one of its most powerful features, permitting a wide range of different algorithms
to be selecte...
- EMAN1/FAQ/HeterogeneousPhase . . . 5 matches
- ...and want to know where I can find information on the phase residuals of the data set in EMAN to see if it can reveal the extent of the heterogeneity of my data.
'''A:'''
What do ...
- eman2Assertion . . . 4 matches
- ...'''How to use assertion in EMAN2?'''
EMAN2 has wrapped standard assert call as Assert. The header file is "emassert.h" instead of standard <cassert> or <assert.h>. The assert call...
- FAQ_EMAN_USING_20 . . . 4 matches
- ...How can I determine the symmetry of my particles ?
'''Answer:''' This can be done in EMAN, though it doesn't use rotational power spectra. While we have played with rotational p...
- EMAN2/SimulatedData . . . 4 matches
- ...ns. {{{e2help.py orientgen}}} for other possibilities
* if your input map possesses [[EMAN2/Symmetry|symmetry]], you can specify --sym <symmetry>, though this isn't very meaningf...
- EMAN2/Programs/e2workflow . . . 4 matches
- ...= e2workflow =
EMAN2 uses a project management Workflow system to guide users through a series of steps embodying specific tasks,
for example, single particle reconstruction. The ...
- EMAN2/Programs/e2refinetorelion2d . . . 4 matches
- ...= e2refinetorelion2d =
=== Information ===
This program is normally run via the EMAN2 [[EMAN2/Programs/e2projectmanager|Project Manager]].
''e2refinetorelion2d.py'' is typically...
- EMAN2/Programs/e2refinetofrealign/e2refinetofrealigntutorial . . . 4 matches
- ...Notes:
*The main documentation for ''e2refinetofrealign.py'' can be found [[EMAN2/Programs/e2refinetofrealign|here]]
*This tutorial is designed with an assumption in mind:
*Th...
- EMAN2/Programs/e2project3d . . . 4 matches
- ...s
== e2project3d.py ==
||<35%><<TableOfContents>>||
Add your related questions to [[EMAN2/e2project3dfaq|e2project3d FAQ]].
A desciption of how EMAN demarcates the asymmetric ...
- EMAN2/Programs/e2ctf . . . 4 matches
- ...= e2ctf =
||<<TableOfContents>> || {{attachment:ctf.png}} ||
== CTF Correction in EMAN2 ==
CTF correction in EMAN2 is performed on boxed out particles. There is a [[EMAN2/Theory/C...
- EMAN2/Galleries . . . 4 matches
- ...= Gallery =
* [[EMAN2/Galleries/Testimages|Test images]]
* [[EMAN2/Programs/e2display|e2display features]]
* [[EMAN2/e2desktop_gallery|e2desktop]]
----
||{{attachment:newem3D...
- FAQ_EMAN_USING_23 . . . 3 matches
- ...missing, and is very important. This problem can be tackeled three ways, described in [[EMAN1/FAQ/StructureFactor|this FAQ]]. If you're in the situation where you don't have x-ray ...
- Eman2Metadata . . . 3 matches
- ...This page has moved: [[EMAN2/Eman2Metadata]]...
- EMAN2/Tutorials/AddAndMultiply . . . 3 matches
- ...images that have the same dimensions
{{{#!python
[someone@localhost] e2.py
Welcome to EMAN2
Prompt provided by IPython
Enter '?' for ipython help
In [3]: A = test_image(0)
In ...