Differences

This shows you the differences between two versions of the page.

--- eman2:utmbworkshop2019 [2025/06/19 02:27] – created steveludtke
+++ eman2:utmbworkshop2019 [2025/06/19 02:33] (current) – steveludtke
@@ Line 51: / Line 51: @@
     * [[http://blake.bcm.edu/dl/workshop_2016_bgal.zip|Single Particle Reconstruction Data Download]] (Day 2)
     * [[http://blake.bcm.edu/dl/fassub.tgz|2-D Variability Data]] (Day 3)
-    * [[attachment:EMAN2-3Tutorial.pdf]]
+    * [[http://blake.bcm.edu/dl/EMAN2/EMAN2-3Tutorial.pdf]]
   * If you experience e2display.py crashing on the Mac, try this command to fix the problem :
@@ Line 74: / Line 74: @@
 === COOT (day 4) ===
-  * Please download this data to work with: [[attachment:coot_demo_data.tgz]]
+  * Please download this data to work with: [[http://blake.bcm.edu/dl/EMAN2/coot_demo_data.tgz]]
 <<BR>>
   * [[https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/|Coot]] is a bit tricky to set up, and will only be used for one session on the final day.
@@ Line 104: / Line 104: @@
 || # || Speaker || Topic || File ||
-|| Mo1 || Ludtke || Tomography and EMAN2 Intro || [[attachment:Mo1_Ludtke_Tomography.pdf]] ||
+|| Mo1 || Ludtke || Tomography and EMAN2 Intro || [[http://blake.bcm.edu/dl/EMAN2/Mo1_Ludtke_Tomography.pdf]] ||
-|| Mo2 || Ludtke || High Resolution Subtomogram Averaging || [[attachment:Mo2_Ludtke_HighResTomo.pdf]] ||
+|| Mo2 || Ludtke || High Resolution Subtomogram Averaging || [[http://blake.bcm.edu/dl/EMAN2/Mo2_Ludtke_HighResTomo.pdf]] ||
-|| Mo3 || Chen || CryoET workflow || [[attachment:Mo3_Chen_cryoet.pdf]] ||
+|| Mo3 || Chen || CryoET workflow || [[http://blake.bcm.edu/dl/EMAN2/Mo3_Chen_cryoet.pdf]] ||
-|| Mo4 || Chen || Deep Learning in CryoEM/CryoET || [[attachment:Mo3_Chen_DeepLearning.pdf]] ||
+|| Mo4 || Chen || Deep Learning in CryoEM/CryoET || [[http://blake.bcm.edu/dl/EMAN2/Mo3_Chen_DeepLearning.pdf]] ||
-|| Tu1 || Ludtke || Single Particle Intro || [[attachment:Tu1_Ludtke_SPAIntro.pdf]] ||
+|| Tu1 || Ludtke || Single Particle Intro || [[http://blake.bcm.edu/dl/EMAN2/Tu1_Ludtke_SPAIntro.pdf]] ||
-|| Tu2 || Sherman || CTF and Micrograph Quality || [[attachment:Tu2_Sherman_CTF.pdf]] ||
+|| Tu2 || Sherman || CTF and Micrograph Quality || [[http://blake.bcm.edu/dl/EMAN2/Tu2_Sherman_CTF.pdf]] ||
-|| Tu3 || Chen || Particle Picking || [[attachment:Tu3_Chen_Picking.pdf]]||
+|| Tu3 || Chen || Particle Picking || [[http://blake.bcm.edu/dl/EMAN2/Tu3_Chen_Picking.pdf]]||
-|| Tu4 || Shaikh || Initial Model Building Strategies || [[attachment:Tu4_Shaikh_InitialModel.pdf]]||
+|| Tu4 || Shaikh || Initial Model Building Strategies || [[http://blake.bcm.edu/dl/EMAN2/Tu4_Shaikh_InitialModel.pdf]]||
-|| We1 || Ludtke || Quick software survey || [[attachment:We1_Ludtke_OtherSoftware.pdf]]||
+|| We1 || Ludtke || Quick software survey || [[http://blake.bcm.edu/dl/EMAN2/We1_Ludtke_OtherSoftware.pdf]]||
-|| We2 || Ludtke || Variability || [[attachment:We2_Ludtke_Variability.pdf]]||
+|| We2 || Ludtke || Variability || [[http://blake.bcm.edu/dl/EMAN2/We2_Ludtke_Variability.pdf]]||
-|| We3 || Baker || Symmetry ||[[attachment:We3_Baker_Symmetry.pdf]] ||
+|| We3 || Baker || Symmetry ||[[http://blake.bcm.edu/dl/EMAN2/We3_Baker_Symmetry.pdf]] ||
-|| We4 || Shaikh || Sphire ||[[attachment:We4_Shaikh_Cryolo.pdf]] ||
+|| We4 || Shaikh || Sphire ||[[http://blake.bcm.edu/dl/EMAN2/We4_Shaikh_Cryolo.pdf]] ||
-|| We4 || Shaikh || Sphire - Reproducibility ||[[attachment:We4_Shaikh_Reproducibility.pdf]] ||
+|| We4 || Shaikh || Sphire - Reproducibility ||[[http://blake.bcm.edu/dl/EMAN2/We4_Shaikh_Reproducibility.pdf]] ||
-|| We5 || Baker || Resolution ||[[attachment:We5_Baker_Resolution.pdf]] ||
+|| We5 || Baker || Resolution ||[[http://blake.bcm.edu/dl/EMAN2/We5_Baker_Resolution.pdf]] ||
-|| Th1 || Ludtke || EMAN2 in Python ||[[attachment:Th1_Ludtke_Python.pdf]] ||
+|| Th1 || Ludtke || EMAN2 in Python ||[[http://blake.bcm.edu/dl/EMAN2/Th1_Ludtke_Python.pdf]] ||
-|| Th2 || Afonine || Phenix ||[[attachment:Th2_Afonine_Phenix.pdf]] ||
+|| Th2 || Afonine || Phenix ||[[http://blake.bcm.edu/dl/EMAN2/Th2_Afonine_Phenix.pdf]] ||
-|| Th3 || Baker || Chimera ||[[attachment:Th3_Baker_Chimera.pdf]] ||
+|| Th3 || Baker || Chimera ||[[http://blake.bcm.edu/dl/EMAN2/Th3_Baker_Chimera.pdf]] ||
-|| Th4 || Lynch || Flexible Fitting ||[[attachment:Th4_Lynch_FlexibleFitting.pdf]] ||
+|| Th4 || Lynch || Flexible Fitting ||[[http://blake.bcm.edu/dl/EMAN2/Th4_Lynch_FlexibleFitting.pdf]] ||
-|| Th5 || Smith || Coot ||[[attachment:Th5_Smith_Coot.pdf]] ||
+|| Th5 || Smith || Coot ||[[http://blake.bcm.edu/dl/EMAN2/Th5_Smith_Coot.pdf]] ||
-|| Th6 || Yen || Automation ||[[attachment:Th6_Yen_Automation.pdf]] ||
+|| Th6 || Yen || Automation ||[[http://blake.bcm.edu/dl/EMAN2/Th6_Yen_Automation.pdf]] ||
 ----
 If you have any general questions about things on this page, please email Steve Ludtke <sludtke@bcm.edu>
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-cp "/raid/www/emanwiki/data/pages/UTMBWorkshop2019/attachments/Th5_Smith_Coot.pdf" /raid/stevel/public_html/EMAN2
-cp "/raid/www/emanwiki/data/pages/UTMBWorkshop2019/attachments/Mo2_Ludtke_HighResTomo.pdf" /raid/stevel/public_html/EMAN2
-cp "/raid/www/emanwiki/data/pages/UTMBWorkshop2019/attachments/We4_Shaikh_Cryolo.pdf" /raid/stevel/public_html/EMAN2
-cp "/raid/www/emanwiki/data/pages/UTMBWorkshop2019/attachments/Mo3_Chen_DeepLearning.pdf" /raid/stevel/public_html/EMAN2
-cp "/raid/www/emanwiki/data/pages/UTMBWorkshop2019/attachments/Th2_Afonine_Phenix.pdf" /raid/stevel/public_html/EMAN2
-cp "/raid/www/emanwiki/data/pages/UTMBWorkshop2019/attachments/Tu2_Sherman_CTF.pdf" /raid/stevel/public_html/EMAN2
-cp "/raid/www/emanwiki/data/pages/UTMBWorkshop2019/attachments/Th6_Yen_Automation.pdf" /raid/stevel/public_html/EMAN2
-cp "/raid/www/emanwiki/data/pages/UTMBWorkshop2019/attachments/coot_demo_data.tgz" /raid/stevel/public_html/EMAN2
-cp "/raid/www/emanwiki/data/pages/UTMBWorkshop2019/attachments/We3_Baker_Symmetry.pdf" /raid/stevel/public_html/EMAN2
-cp "/raid/www/emanwiki/data/pages/UTMBWorkshop2019/attachments/Tu1_Ludtke_SPAIntro.pdf" /raid/stevel/public_html/EMAN2
-cp "/raid/www/emanwiki/data/pages/UTMBWorkshop2019/attachments/Tu4_Shaikh_InitialModel.pdf" /raid/stevel/public_html/EMAN2
-cp "/raid/www/emanwiki/data/pages/UTMBWorkshop2019/attachments/Th1_Ludtke_Python.pdf" /raid/stevel/public_html/EMAN2
-cp "/raid/www/emanwiki/data/pages/UTMBWorkshop2019/attachments/We4_Shaikh_Reproducibility.pdf" /raid/stevel/public_html/EMAN2
-cp "/raid/www/emanwiki/data/pages/UTMBWorkshop2019/attachments/namd_tutorial.zip" /raid/stevel/public_html/EMAN2
-cp "/raid/www/emanwiki/data/pages/UTMBWorkshop2019/attachments/EMAN2-3Tutorial.pdf" /raid/stevel/public_html/EMAN2
-cp "/raid/www/emanwiki/data/pages/UTMBWorkshop2019/attachments/Th4_Lynch_FlexibleFitting.pdf" /raid/stevel/public_html/EMAN2
-cp "/raid/www/emanwiki/data/pages/UTMBWorkshop2019/attachments/We5_Baker_Resolution.pdf" /raid/stevel/public_html/EMAN2
-cp "/raid/www/emanwiki/data/pages/UTMBWorkshop2019/attachments/Mo1_Ludtke_Tomography.pdf" /raid/stevel/public_html/EMAN2
-cp "/raid/www/emanwiki/data/pages/UTMBWorkshop2019/attachments/We1_Ludtke_OtherSoftware.pdf" /raid/stevel/public_html/EMAN2
-cp "/raid/www/emanwiki/data/pages/UTMBWorkshop2019/attachments/Mo3_Chen_cryoet.pdf" /raid/stevel/public_html/EMAN2
-cp "/raid/www/emanwiki/data/pages/UTMBWorkshop2019/attachments/Tu3_Chen_Picking.pdf" /raid/stevel/public_html/EMAN2
-cp "/raid/www/emanwiki/data/pages/UTMBWorkshop2019/attachments/We2_Ludtke_Variability.pdf" /raid/stevel/public_html/EMAN2