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Workshop on Single Particle Reconstruction,
Visualization and Animation
Date
December 11 15, 2002
Location
University of Houston
Texas Learning and Computation Center
Houston, Texas
Instructors
Tony CrowtherMedical Research Council
LMB Cambridge
Pawel PenczekUniversity of Texas
Houston Medical SchoolChandrajit BajajUniversity of Texas
AustinMatthew DoughertyBaylor College of Medicine
Wen JiangBaylor College of MedicineMatthew BakerBaylor College of MedicineSteve LudtkeBaylor College of MedicineWah ChiuBaylor College of Medicine
Organizers
Dana Feinberg
Feinberg@bcm.tmc.edu
voice: 713-798-8729
fax: 713-798-1625
*Administrative contactSteve Ludtke
sludtke@bcm.tmc.edu
voice: 713-798-6989
fax: 713-798-8031
Wah Chiu
wah@bcm.tmc.edu
voice: 713-798-6985
fax: 713-798-1625
Sponsors
Agouron Institute
National Center for Research Resources, NIH
Texas Learning and Computation Center, University of Houston
Registration Deadline
October 1, 2002
No registration fee
On-line Registration: http://ncmi.bcm.tmc.edu/Workshop2002
Outline
This five day workshop will provide a strong background on EM image processing and cover the entire single-particle reconstruction process as implemented in EMAN as well as various techniques for interpretation, visualization, and animation of reconstructed models. Experts in the field will give introductory lectures on image processing theory each morning, followed by practical workshops each afternoon. Each participant will be provided access to an individual high-end PC in the University of Houston's state of the art teaching facility.
Day 1
AM (Lecture) - General image formation theory, Introduction to EMAN
Tony Crowther, Wah Chiu, Steve Ludtke
PM (Hands-on) - Installing EMAN, initial model generation
Day 2
AM (Lecture) - Reconstruction theory, EMAN refinements
Pawel Penczek, Tony Crowther, Steve Ludtke
PM (Hands-on) - CTF, model refinement techniques
Day 3
AM (Lecture) - Other approaches, other software, data heterogeneity
Pawel Penczek, Tony Crowther, Steve Ludtke
PM (Hands-on) - Evaluate results, specialized techniques
Day 4
AM (Lecture) - Structure interpretation, visualization, animations
Matthew Dougherty, Chandrajit Bajaj, Wen Jiang, Matthew Baker
PM (Hands-on) SAIL, FOLDHUNTER, HELIXHUNTER
Day 5 (optional)
Assist attendees on specific research related problems. Attendees are encouraged to bring raw data or processed models they are interested in processing or visualizing. Instructors will be available for one-on-one discussions and assistance.
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