| --version |
None |
show program's version number and exit |
| --saveali |
None |
Save a stack file (aliptcls_XX.hdf) containing the aligned particles. |
| --path |
str |
Path to a folder with existing e2a2d_align results (default = 2da_XX) |
| --iter |
int |
Iteration number within path. Default = highest existing iteration |
| --scorebestset |
int |
Will extract the N particles with the best scores to make a new set |
| --scorebands |
int |
If specified will generate averages over N bands of 'score' values, including only particles in each band. |
| --scorebandsali |
int |
If specified will generate averages over N bands of 'score' values, including only particles in each band, and iteratively realigning in each band. |
| --scoreprogressive |
int |
If specified will generate progressive averages over N bands of 'score' values, including all particles starting with the best through the progressive bands. |
| --verbose, -v |
int |
verbose level [0-9], higher number means higher level of verboseness |
| --ppid |
int |
Set the PID of the parent process, used for cross platform PPID |