usage: prog [options] <image> <image2>....

	The even newer version of e2boxer. Complete rewrite..

Option Type Description
--version None show program's version number and exit
--allmicrographs None Add all images from micrographs folder
--unboxedonly None Only include image files without existing box locations
--boxsize, -B int Box size in pixels
--ptclsize, -P int Longest axis of particle in pixels (diameter, not radius)
--compressbits int Bits to keep when writing images with compression. 0->lossless floating point. Default 6
--write_dbbox None Export EMAN1 .box files
--write_ptcls None Extract selected particles from micrographs and write to disk
--invert None If specified, inverts input contrast. Particles MUST be white on a darker background.
--no_ctf None Disable CTF determination
--suffix str Suffix of the micrographs used for particle picking (i.e. suffix=goodali will use micrographs end with __goodali.hdf). It is only useful when [allmicrographs] is True.
--apix float Angstroms per pixel for all images
--voltage float Microscope voltage in KV
--cs float Microscope Cs (spherical aberation)
--ac float Amplitude contrast (percentage, default=10)
--autopick str Perform automatic particle picking. Provide mode and parameter string, eg - auto_local:threshold=5.5
--gui None Interactive GUI mode
--threads int Number of threads to run in parallel on a single computer when multi-computer parallelism isn't useful
--ppid int Set the PID of the parent process, used for cross platform PPID
--device str For Convnet training only. Pick a device to use. chose from cpu, gpu, or gpuX (X=0,1,...) when multiple gpus are available. default is cpu
--verbose, -v int verbose level [0-9], higher number means higher level of verboseness

For more information go to emanwiki/EMAN2/Programs/e2boxer.