e2buildsets

usage: prog [options] <stackname1> <stackname2> ...
	This will take selected images from stacks of per-micrograph particles and build "sets", which are pseudo-stack files referencing the images in the original files.
	This supports the old convention where BDB files are used for both particles and stacks as well as the new convention where particles are in HDF files and stacks are in LST format.
	Inputs are a list of micrograph base names, and must be in a "particles" directory. For example, particles/jj1234_ctf_flip.hdf would be specified simply as jj1234. Some
	attempts will be made to correct improper specifications.

	e2buildsets.py dh1234 dh2318 dh7965 --excludebad --setname=myset

	This will look in the particles directory for files such as:
	dh1234_ptcls
	dh1234_ptcls_ctf_flip
	...

	and build a separate set for each type (_ctf_flip, _wienesr, ...)

Option	Type	Description
--version	None	show program's version number and exit
--setname	str	Name of the stack to build
--excludebad	None	Exclude bad particles.
--allparticles	None	Will process all particle stacks stored in the particles subdirectory (if specified, list of files will be ignored)
--withflipped	None	Only include images with phase-flipped counterparts!
--withinvar	None	Only include images with _invar counterparts!
--minptcl	int	Files with fewer than the specified number of particles will be skipped
--minqual	int	Files with a quality value lower than specified will be skipped
--mindf	float	Files with a defocus lower than specified will be skipped
--maxdf	float	Files with a defocus higher than specified will be skipped
--minlosnr	float	Integrated SNR from 1/200-1/20 1/A must be larger than this
--minhisnr	float	Integrated SNR from 1/10-1/4 1/A must be larger than this
--minbfactor	float	Files with a B-factor lower than specified will be skipped
--maxbfactor	float	Files with a B-factor higher than specified will be skipped
--ppid	int	Set the PID of the parent process, used for cross platform PPID
--verbose, -v	int	verbose level [0-9], higher number means higher level of verboseness