usage: prog [options] --stackname myfile.hdf <image1> <image2> <image3> ... This program will combine many image files into a single output file. If the output name has a ".lst" extension: the output is a formatted text file, one line per image, describing the file containing the actual image data in a searchable form. .lst files can be used as if they contained actual images in any EMAN2 programs. If the output is a normal image file (.hdf, .spi, etc.) then the images will be copied into the output file sequentially in the order provided on the command-line. Some file formats will not support multiple images, or multiple volumes. Appropriate errors will be raised in these cases. HDF is the only format supporting full metadata retention for stacks of images or volumes. The output file will be emptied and overwritten!
| Option | Type | Description |
|---|---|---|
| --version | None | show program's version number and exit |
| --output | str | Name of the output stack to build (Extension will be .hdf unless specified). Note, all tiltseries will be stored in the 'tiltseries' directory. |
| --tilts | None | Write results to 'tiltseries' directory in current project. |
| --guess | None | Guess how to split micrographs into tilt series and the order of images in each tilt series from file names. Tilt angles must be incuded in file names. May and may not work depending on the file name format... |
| --guesscol | int | column to separate tilt series if the guess mode fails |
| --ppid | int | Set the PID of the parent process, used for cross platform PPID |
| --verbose, -v | int | verbose level [0-9], higher number means higher level of verboseness |
| --tltang | str | a text file for tilt angle. will sort the images in each stack accrodingly |