| --version |
None |
show program's version number and exit |
| --apix |
float |
The angstrom per pixel of the micrographs |
| --cs |
float |
The spherical aberration of the microscope |
| --voltage |
float |
The voltage (in kV) of the microscope |
| --ac |
float |
The amplitude contrast of the micrographs |
| --verbose, -v |
int |
verbose level [0-9], higher number means higher level of verboseness |
| --importrelionstar |
None |
Import CTFFIND3 data in Relion STAR format. Put STAR files in 'ctffind3' folder |
| --ctfversion |
str |
version of ctffind. default is ctffind4 |
| --importctffind |
None |
Import ctffind4 data? |
| --ppid |
int |
Set the PID of the parent process, used for cross platform PPID |
| --allmicrographs |
None |
Run Ctffind3 on all micrographs in the micrographs directory? |
| --maxres |
float |
The highest resolution to be fitted (Angstroms) |
| --minres |
float |
The lowest resolution to be fitted (Angstroms) |
| --defocusmin |
float |
The starting defocus value for grid search (microns) |
| --defocusmax |
float |
The end defocus value for grid search (microns) |
| --defocusstep |
float |
The step width for grid search (microns) |
| --runctffind |
None |
Run ctffind on the selected micrographs? |
| --windowsize |
int |
window size |
| --flipmicrograph |
None |
phase flip micrographs using the imported ctf information |