| --version |
None |
show program's version number and exit |
| --apix |
float |
Override Apix in image header. |
| --lowpass |
float |
Multiply lowpass filter frequency by this constant when filtering noise image. Default is 1.11. |
| --coords |
str |
Specify box file with x and y gold coordinates. Must follow standard box file format (x<tab>y<tab>xsize<ysize>) although box sizes are ignored. |
| --keepdust |
None |
Do not remove 'dust' from mask (include objects smaller than gold fiducials). |
| --goldsize |
float |
Diameter (in pixels) of gold fiducials to erase. |
| --oversample |
int |
Oversample noise image to smooth transitions from regions with different noise. |
| --boxsize |
int |
Box size to use when computing local noise. |
| --debug |
None |
Save noise and mask/masked image(s). |
| --verbose, -v |
int |
verbose level [0-9], higher number means higher level of verboseness |
| --ppid |
int |
Set the PID of the parent process, used for cross platform PPID |
| --parallel |
str |
Default=None (not used). Parallelism. See http://blake.bcm.edu/emanwiki/EMAN2/Parallel |
| --subset |
int |
Default=0 (not used). Apply algorithm to only a subset of images in each stack file. |
| --nsigmas |
float |
Default=3.0. Number of standard deviations above the mean to determine pixels to mask out (erase). |