--version |
None |
show program's version number and exit |
--path |
str |
Path to write initial model output. Default is initmodel_XX |
--ptcls |
str |
Class average or particles input. |
--sym |
str |
Specify symmetry - choices are: c<n>, d<n>, h<n>, tet, oct, icos |
--batchsize |
int |
Batch size of stochastic gradient desent. N particles are randomly selected to generate an initial model at each step. |
--niter |
int |
Number of iterations |
--ntry |
int |
The number of different initial models to generate in search of a good one |
--learnrate |
float |
Learning rate. i.e. how much the initial model changes toward the gradient direction in each iteration. Range from 0.0~1.0. Default is 0.3 |
--lrdecay |
float |
Learning rate multiplier after each iteration. |
--addnoise |
float |
Add noise on particles at each iteration. Stablize convergence for some reason. |
--shrink |
int |
shrinking factor |
--setsf |
str |
|
--ref |
str |
|
--writetmp |
None |
Write output for each iteration |
--fullcov |
None |
Assume the input particles covers most of the orientation of the model. This gives better performance when the model is relatively feature-less, but is more likely to fail when there are incorrect particles in the input. |
--threads |
int |
threads |
--verbose, -v |
int |
Verbose |
--targetres |
float |
Target resolution |