e2proclst

usage: Usage:
proclst.py [options] <lst 1> <lst 2> ... 
Simple manipulations of LST files. If your goal is to produce an actual image file rather than the
sort of virtual stack represented by .lst files, use e2proc2d.py or e2proc3d.py instead. Those other programs will treat LST files as normal image files for input.
.

Option	Type	Description
--version	None	show program's version number and exit
--create	str	to use this option, the input files should be image files. Specify an .lst or .lsx file to create here (e.g., --create mylst.lst) with references to all of the images in the inputs.
--eosplit	None	Will generate _even and _odd .lst files for each specified input .lst file
--dereforig	str	Extract the data_source and data_n parameters from each image in the file and create a new .lst file referencing the original image(s)
--exclude	str	only works if --create is supplied. comma-separated list of indexes from the input file(s) to EXCLUDE from the created .lst file.
--include	str	only works if --create is supplied. comma-separated list of indexes to take from the input file(s) to INCLUDE in the created .lst file. if you have the list of indexes to include in a .txt file, you can provide it through --list.
--inplace	None	only works with --create. if the stack specified in --create already exists, this will prevent appending to it. rather, the file will be modified in place.
--list	str	only works if --create is supplied. .txt file with a list of indexes (one per line/row) to take from the input file(s) to INCLUDE in the created .lst file.
--merge	str	Specify the output name here. This will concatenate all of the input .lst files into a single output
--mergesort	str	Specify the output name here. This will merge all of the input .lst files into a single (resorted) output
--mergeeo	None	Merge even odd lst.
--minhisnr	float	Integrated SNR from 1/10-1/4 1/A must be larger than this
--minlosnr	float	Integrated SNR from 1/200-1/20 1/A must be larger than this
--mindf	float	Minimum defocus
--maxdf	float	Maximum defocus
--numaslist	str	extract the particle indexes (numbers) only from an lst file into a text file (one number per line).
--ppid	int	Set the PID of the parent process, used for cross platform PPID
--range	str	Range of particles to use. Works only with --create option. Input of 0,10,2 means range(0,10, step=2).
--retype	str	If a lst file is referencing a set of particles from particles/imgname__oldtype.hdf, this will change oldtype to the specified string in-place (modifies input files)
--refile	str	similar to retype, but replaces the full filename of the source image file with the provided string
--nocomments	None	Removes the comments from each line of the lst file.
--verbose, -v	int	verbose level [0-9], higher number means higher level of verboseness