e2procpdb

usage: Usage:
procpdb.py <input>
procpdb.py <input> <output> [rot=<alt,az,phi>] [trans=<dx,dy,dz>] [centeratoms] [centerelec] [centermass] 
.

Option	Type	Description
--version	None	show program's version number and exit
--animorph, -AN	str	This will use a morph vector file (segment3d) to morph atom positions,#P [animorph=<n>,<apix>,<vecfile>]
--scale, -S	float	scale
--center, -C	str	center of the rotation, (0,0,0)
--chains	str	String list of chain identifiers to include, eg 'ABEFG'
--trans, -TR	str	transform, (0,0,0)
--include	str	savetype
--mirror	bool	mirror
--matrix, -matrix	str	transform matrix.
--rot	str	Rotate map. Specify az,alt,phi or convention:par=val:par=val:... eg - mrc:psi=22:theta=15:omega=7
--type, -T	str	convention type
--az, -az	float	az in eman convention.
--alt, -alt	float	alt in eman convention.
--phi, -phi	float	phi.
--alpha, -alpha	float	alpha in imagic convention.
--beta, -beta	float	beta in imagic convention.
--gamma, -gamma	float	gamma in imagic convention.
--theta, -theta	float	theta.
--psi, -psi	float	psi in spider convention.
--xtilt, -xtilt	float	xtilt in xyz convention.
--ytilt, -ytilt	float	ytilt in xyz convention.
--ztilt, -ztilt	float	ztilt in xyz convention.
--omega, -omega	float	omega.
--e0, -e0	float	e0 in quaternion convention.
--e1, -e1	float	e1 in quaternion convention.
--e2, -e2	float	e2 in quaternion convention.
--e3, -e3	float	e3 in quaternion convention.
--n1, -n1	float	n1.
--n2, -n2	float	n2.
--n3, -n3	float	n3.
--q, -q	float	q in sgirot convention.