usage: prog <imagefile> [<imagefile>] [imagefile] [options] Generates 2-D projections of a 3-D object or multiple 3-D objects. Various options for specifiying distribution of orientations and other options. Typical usage: e2project3d.py map.mrc --outfile=projections.hdf --orientgen=eman:delta=5 --sym=c3 --projector=standard --verbose=2
Option | Type | Description |
---|---|---|
--version | None | show program's version number and exit |
--sym | None | Specify symmetry - choices are: c<n>, d<n>, h<n>, tet, oct, icos. If multiple input models are specified, multiple comma-separated symmetries may also be specified. |
--orientgen | None | The orientation generator to use. See e2help.py orientgen. Example: --orientgen=eman:delta=3.0:inc_mirror=0:perturb=1 |
--outfile | None | Output file. Default is 'e2proj.img' |
--smear | int | Used in conjunction with --phitoo, this will rotationally smear between phi steps. The user must specify the amount of smearing (typically 2-10) |
--projector | None | Projector to use |
--append, -a | None | Append to the output file |
--verbose, -v | int | verbose level [0-9], higher number means higher level of verboseness |
--check, -c | None | Checks to see if the command line arguments will work. |
--nofilecheck | None | Turns file checking off in the check functionality - used by e2refine.py. |
--postprocess | str | postprocessor to be applied to each projection. There can be more than one postprocessor, and they are applied in the order in which they are specified. See e2help.py processors for a complete list of available processors. |
--cuda | None | Use CUDA for the projections. |
--prethreshold | None | Applies an automatic threshold to the volume before projecting |
--compressbits | int | Bits to keep when writing projections with compression. 0->lossless floating point. Default 10 (3 significant figures) |
--ppid | int | Set the PID of the parent process, used for cross platform PPID |
--parallel | str | Parallelism string |
For more information go to emanwiki/EMAN2/Programs/e2project3d.