e2rawdata

usage: prog [options] <micrograph1, micrograph2....>
	Use this program to import and filter raw micrographs, including automatic micrograph-based CTF determination. This program will process each micrograph
	and copy them into the directory './micrographs.', otherwise the micrographs will simply be moved into './micrographs'. If you select the option
	--moverawdata AND you filter or change format, your original micrographs will be moved into the directory './raw_micrographs' and your
	filtered micrographs will be in './micrographs as usual.

Option	Type	Description
--version	None	show program's version number and exit
--invert	None	Invert contrast
--compressbits	int	Bits to keep when writing images. 4 generally safe for raw data. 0-> true lossless (floating point). Default 6
--edgenorm	None	Edge normalize
--usefoldername	None	If you have the same image filename in multiple folders, and need to import into the same project, this will prepend the folder name on each image name
--xraypixel	None	Filter X-ray pixels
--ctfest	None	Perform CTF fitting on the (tiled) frame
--phaseplate	None	Include phase/amplitude contrast in CTF estimation. For use with hole-less phase plates.
--astigmatism	None	Includes astigmatism in automatic fitting
--moverawdata	None	Move raw data to directory ./raw_micrographs after filtration
--apix	float	Angstroms per pixel for all images
--voltage	float	Microscope voltage in KV
--cs	float	Microscope Cs (spherical aberation)
--ac	float	Amplitude contrast (percentage, default=10)
--threads	int	Number of threads to run in parallel on a single computer when multi-computer parallelism isn't useful
--defocusmin	float	Minimum autofit defocus
--defocusmax	float	Maximum autofit defocus
--verbose, -v	int	verbosity [0-9]
--ppid	int	Set the PID of the parent process, used for cross platform PPID