usage: Sub-frame alignment for single particle analysis. Need specific format for motion correction and refinement to work properly. The improvement in resolution seems marginal. Not ready to use yet.

Option Type Description
--version None show program's version number and exit
--ptclin str particle input
--ptclout str particle output
--ref str reference input
--parallel str Thread/mpi parallelism to use. Default is thread:12
--debug None Turn on debug mode. This will only process a small subset of the data
--maxres float max resolution for cmp
--minrespx int skip the first x pixel in fourier space
--ppid int ppid...
--verbose, -v int Verbose