usage: prog [options]
	This program performs various assessments of e2spt_refine (or similar) runs, and operates in one of several possible modes:

		compares the orientation of each particle between two different json files (may be from the same or different runs)
		producing jsonstat.txt

		will report how long each refinement took to complete as well as individual tasks within the refinement
		will report total timing information for each refinement folder, along with useful refinement parameters
		Computes FSC curves for the final iteration of every refinement folder
		Computes FSC curve for the final iteration of each refine_xx folder vs a provided reference volume. 

Option Type Description
--version None show program's version number and exit
--jsonortcmp None Compare the particle orientations from two .json files. Provide the path to 2 json files as arguments to the command.
--timing None Report on the time required for each step of each refinement run
--timingbypath None Report on the CPU time required in each refine_xx folder
--resolution_all None generates resolution plot with the last iteration of all refine_xx directories
--resolution_vsref str Computes the FSC between the last iteration of each refine_xx directory and a specified reference map. Map must be aligned, but will be rescaled if necessary.
--sym str Symmetry to be used in searching adjacent unit cells
--threads int Number of threads to run in parallel on a single computer when multi-computer parallelism isn't useful
--ppid int Set the PID of the parent process, used for cross platform PPID
--verbose, -v int verbose level [0-9], higher number means higher level of verboseness