usage: prog [options]
This program performs various assessments of e2spt_refine (or similar) runs, and operates in one of several possible modes:
compares the orientation of each particle between two different json files (may be from the same or different runs)
will report how long each refinement took to complete as well as individual tasks within the refinement
will report total timing information for each refinement folder, along with useful refinement parameters
Computes FSC curves for the final iteration of every refinement folder
Computes FSC curve for the final iteration of each refine_xx folder vs a provided reference volume.
||show program's version number and exit
||Compare the particle orientations from two .json files. Provide the path to 2 json files as arguments to the command.
||Report on the time required for each step of each refinement run
||Report on the CPU time required in each refine_xx folder
||generates resolution plot with the last iteration of all refine_xx directories
||Computes the FSC between the last iteration of each refine_xx directory and a specified reference map. Map must be aligned, but will be rescaled if necessary.
||Symmetry to be used in searching adjacent unit cells
||Number of threads to run in parallel on a single computer when multi-computer parallelism isn't useful
||Set the PID of the parent process, used for cross platform PPID
||verbose level [0-9], higher number means higher level of verboseness