e2spt_evalrefine

usage: prog [options]
	This program performs various assessments of e2spt_refine (or similar) runs, and operates in one of several possible modes:

	--jsonortcmp
		compares the orientation of each particle between two different json files (may be from the same or different runs)
		producing jsonstat.txt

	--timing
		will report how long each refinement took to complete as well as individual tasks within the refinement
		
	--timingbypath
		will report total timing information for each refinement folder, along with useful refinement parameters
	
	--resolution_all
		Computes FSC curves for the final iteration of every refinement folder
		
	--resolution_vsref
		Computes FSC curve for the final iteration of each refine_xx folder vs a provided reference volume.

Option	Type	Description
--version	None	show program's version number and exit
--jsonortcmp	None	Compare the particle orientations from two .json files. Provide the path to 2 json files as arguments to the command.
--timing	None	Report on the time required for each step of each refinement run
--timingbypath	None	Report on the CPU time required in each refine_xx folder
--resolution_all	None	generates resolution plot with the last iteration of all refine_xx directories
--resolution_vsref	str	Computes the FSC between the last iteration of each refine_xx directory and a specified reference map. Map must be aligned, but will be rescaled if necessary.
--sym	str	Symmetry to be used in searching adjacent unit cells
--threads	int	Number of threads to run in parallel on a single computer when multi-computer parallelism isn't useful
--ppid	int	Set the PID of the parent process, used for cross platform PPID
--verbose, -v	int	verbose level [0-9], higher number means higher level of verboseness