usage: This program is designed to extract subtomograms from segmentation results from the Tomoseg workflow in EMAN2. Run e2spt_boxer22 to visualize the results, and follow the SPT protocol for following steps.

Option Type Description
--version None show program's version number and exit
--thresh float Threshold of density value for particle extraction.
--featurename str name of the current feature to extract
--boxsz int Box size
--random int Specifying N will randomly seed N particles on density above threshold. default is -1, means only choosing peaks. Useful for non-globular particles
--massthresh float Threshold of total mass of each continous object to be considered a particle.
--edge int mininmum distance to the edge of tomogram
--sort None Sort particles by segmentation density.
--ppid int ppid