e2spt_intrafsc

usage: 
		This program takes a subtomgoram tiltseries (subtiltseries) as extracted with
		e2spt_subtilt.py, and computes the resolution of two volumes reconstructed with
		the even and the odd images in the tilt series. Must be in HDF format.
		Note that the apix in the header must be accurate to get sensible results.
		(You can fix the header of an image with e2fixheaderparam.py).

Option	Type	Description
--version	None	show program's version number and exit
--averager	str	Default=mean.tomo. The type of averager used to produce the class average.
--averagehalves	None	Default=False. This will average the even and odd volumes.
--input	str	Default=None. Subtiltseries file to process. If processing a single file, --inputstem will work too, but you can also just provide the entire filename here --input=subt00.hdf
--inputstem	str	Default=None. Aligned tilt series. String common to all files to be processed, in the current folder. For example, if you have many subtiltseries named subt00.hdf, subt01.hdf, ...subt99.hdf, you would supply --stem=subt to have all these processed.
--nolog	None	Default=False. Turn off recording of the command ran for this program onto the .eman2log.txt file
--nonewpath	None	Default=False. If True, a new --path directory will not be made. Therefore, whatever is sepcified in --path will be used as the output directory. Note that this poses the risk of overwriting data.
--normproc	str	default=None. Normalization processor to apply to the reconstructed halves; e.g., --normproc=normalize.edgemean.
--pad2d	float	Default=0.0. Padding factor (e.g., 2.0, to make the box twice as big) to zero-pad the 2d images in the tilt series for reconstruction purposes (the final reconstructed subvolumes will be cropped back to the original size though).
--pad3d	float	Default=0.0. Padding factor (e.g., 2.0, to make the box twice as big) to zero-pad the volumes for reconstruction purposes (the final reconstructed subvolumes will be cropped back to the original size though).
--path	str	Default=sptintrafsc. Directory to save the results.
--ppid	int	default=-1. Set the PID of the parent process, used for cross platform PPID.
--savehalftiltseries	None	Default=False. If this parameter is on, the odd and even subtiltseries will be saved.
--savehalfvolumes	None	Default=False. If this parameter is on, the odd and even volumes will be saved.
--reconstructor	str	Default=fourier:mode=gauss_2. The reconstructor to use to reconstruct the tilt series into a tomogram. Type 'e2help.py reconstructors' at the command line to see all options and parameters available. To specify the interpolation scheme for the fourier reconstructor, specify 'mode'. Options are 'nearest_neighbor', 'gauss_2', 'gauss_3', 'gauss_5'. For example --reconstructor=fourier:mode=gauss_5
--verbose, -v	int	verbose level [0-9], higher number means higher level of verboseness