usage: prog --path <spt_xx> --iter <X> --tomo <tomogram> map aligned particles back to tomograms
| Option | Type | Description |
|---|---|---|
| --version | None | show program's version number and exit |
| --path | str | spt_xx path |
| --iter | int | iteration number |
| --tomo | str | tomogram file name |
| --avg | str | 3D volume to insert. spt_xx/threed_xx if unspecified |
| --postxf | str | extra shift after alignment |
| --keep | float | propotion to keep. will exclude bad particles if this is smaller than 1.0 |
| --gui | None | open the resulting map and tomogram in a GUI display |
| --new | None | Results from e2spt_refine_new |
| --ppid | int | ppid... |