| --version |
None |
show program's version number and exit |
| --path |
str |
Path to a folder where results should be stored, following standard naming conventions (default = spt_XX) |
| --iter |
int |
Iteration number within path. Default is the second to last iteration (-2). |
| --nclass |
int |
Number of classes. Default is 2. |
| --maxres |
float |
Filter particles to this resolution (in Angstroms) before classification |
| --sym |
str |
Apply this symmetry. |
| --mask |
str |
Apply this mask. Default is 'mask_tight.hdf' from <--path>_<--iter>. Specify 'none' for no masking |
| --nbasis |
int |
Number of PCA basis vectors. Default is 3. |
| --nowedgefill |
None |
Do not fill the missing wedge before classification. |
| --clean |
None |
remove outliers before PCA. |
| --verbose, -v |
int |
verbose level [0-9], higner number means higher level of verboseness |
| --shrink |
int |
Shrink particles before classification |
| --dotest |
int |
test using N random particles |
| --ppid |
int |
Set the PID of the parent process, used for cross platform PPID |