usage: Usage: e2spt_pcasplit.py --path <spt_XX> [options]

Option Type Description
--version None show program's version number and exit
--path str Path to a folder where results should be stored, following standard naming conventions (default = spt_XX)
--iter int Iteration number within path. Default is the second to last iteration (-2).
--nclass int Number of classes. Default is 2.
--maxres float Filter particles to this resolution (in Angstroms) before classification
--sym str Apply this symmetry.
--mask str Apply this mask. Default is 'mask_tight.hdf' from <--path>_<--iter>. Specify 'none' for no masking
--nbasis int Number of PCA basis vectors. Default is 3.
--nowedgefill None Do not fill the missing wedge before classification.
--clean None remove outliers before PCA.
--verbose, -v int verbose level [0-9], higner number means higher level of verboseness
--shrink int Shrink particles before classification
--dotest int test using N random particles
--ppid int Set the PID of the parent process, used for cross platform PPID