usage: Usage: e2spt_average.py [options] 
Note that this program is not part of the original e2spt hierarchy, but is part of an experimental refactoring.

Will read metadata from the specified spt_XX directory, as produced by e2spt_align.py, and generate projections of the selected subset of particles after
alignment to the reference, projected along the Z axis.

Option Type Description
--version None show program's version number and exit
--threads int Number of alignment threads to run in parallel on a single computer. This is the only parallelism supported by e2spt_align at present.
--iter int Iteration number within path. Default = start a new iteration
--simthr float Similarity is smaller for better 'quality' particles. Specify the highest value to include from e2spt_hist.py. Default -0.1
--replace str Replace the input subtomograms used for alignment with the specified file (used when the aligned particles were masked or filtered)
--minalt float Minimum alignment altitude to include. Default=0
--maxalt float Maximum alignment altitude to include. Deafult=180
--symalimasked str This will translationally realign each asymmetric unit to the specified (usually masked) reference
--sym str Symmetry of the input. Must be aligned in standard orientation to work properly.
--path str Path to a folder containing current results (default = highest spt_XX)
--verbose, -v int verbose level [0-9], higher number means higher level of verboseness
--ppid int Set the PID of the parent process, used for cross platform PPID