| --version |
None |
show program's version number and exit |
| --ncls |
int |
Default=3. Number of classes to sort the particle stack into. In theory, a minimum of 2 conformational classes and 1 'garbage' class should be used. |
| --nbasis |
int |
Basis vectors to use |
| --input |
str |
The name of the volumes stack that HAVE BEEN ALIGNED to a common reference |
| --verbose, -v |
int |
verbose level [0-9], higher number means higher level of verboseness |
| --filter |
int |
Resolution (integer, in Angstroms) at which you want to apply a gaussian lowpass filter to the tomogram prior to loading it for boxing |
| --preprocess |
str |
A processor (as in e2proc3d.py) to be applied to the tomogram before opening it. \nFor example, a specific filter with specific parameters you might like. \nType 'e2proc3d.py --processors' at the commandline to see a list of the available processors and their usage |