usage: prog [options] <Volume file>

	WARNING: This program still under development.
	Tomography 3-D particle picker and annotation tool. Still under development.

Option Type Description
--version None show program's version number and exit
--ncls int Default=3. Number of classes to sort the particle stack into. In theory, a minimum of 2 conformational classes and 1 'garbage' class should be used.
--nbasis int Basis vectors to use
--input str The name of the volumes stack that HAVE BEEN ALIGNED to a common reference
--verbose, -v int verbose level [0-9], higher number means higher level of verboseness
--filter int Resolution (integer, in Angstroms) at which you want to apply a gaussian lowpass filter to the tomogram prior to loading it for boxing
--preprocess str A processor (as in e2proc3d.py) to be applied to the tomogram before opening it. \nFor example, a specific filter with specific parameters you might like. \nType 'e2proc3d.py --processors' at the commandline to see a list of the available processors and their usage