usage: prog [options] <ssehunter_file> <sec_struct_file>

	WARNING: This program is experimental and still under development. Contact mbaker@bcm.edu for more information.	
	ssehunter file is in ??? format
	sec_struct_file is a string of -,H,E defining per-residue predicted structure

Option Type Description
--version None show program's version number and exit
--maxbad, -M int Maximumum number of unassigned helices
--minhelix, -H int Minimum residues in a helix
--maxpairerr, -E float Maximum error match between pairs of helices, default=50
--skelpath, -K str Optional (recommended) output from the e2skelpath.py program
--ppid int Set the PID of the parent process, used for cross platform PPID
--verbose, -v int verbose level [0-9], higher number means higher level of verboseness