EMAN2
Classes | Namespaces | Functions
aligner.h File Reference
#include "emobject.h"
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Classes

class  EMAN::Aligner
 Aligner class defines image alignment method. More...
class  EMAN::ScaleAlignerABS
 This is an ABS for use in constructing, rt_scale, rt_flip, etc scale aligners. More...
class  EMAN::ScaleAligner
 Scale aligner. More...
class  EMAN::TranslationalAligner
 Translational 2D Alignment using cross correlation. More...
class  EMAN::RotationalAligner
 rotational alignment using angular correlation More...
class  EMAN::RotationalAlignerIterative
 rotational alignment using the iterative method (in this case we only do one iteration b/c we are not doing a translation. More...
class  EMAN::RotatePrecenterAligner
 rotational alignment assuming centers are correct More...
class  EMAN::RotateTranslateAligner
 rotational, translational alignment More...
class  EMAN::RotateTranslateScaleAligner
 rotational, translational, scaling alignment More...
class  EMAN::RotateTranslateAlignerIterative
 Iterative rotational, translational alignment. More...
class  EMAN::RotateTranslateScaleAlignerIterative
 Iterative rotational, translational alignment with scaling. More...
class  EMAN::RotateTranslateAlignerPawel
 Rotational, translational alignment by resampling to polar coordinates. More...
class  EMAN::RotateTranslateBestAligner
 rotational, translational alignment More...
class  EMAN::RotateFlipAligner
 rotational and flip alignment More...
class  EMAN::RotateFlipAlignerIterative
 rotational and flip alignment, iterative style More...
class  EMAN::RotateTranslateFlipAligner
 rotational, translational and flip alignment More...
class  EMAN::RotateTranslateFlipScaleAligner
 rotational, translational, flip, scaling alignment More...
class  EMAN::RotateTranslateFlipAlignerIterative
 rotational, translational and flip alignment, iterative style More...
class  EMAN::RotateTranslateFlipScaleAlignerIterative
 Iterative rotational, translational alignment with flipping and scaling. More...
class  EMAN::RotateTranslateFlipAlignerPawel
 Rotational, translational alignment by resampling to polar coordinates. More...
class  EMAN::RTFExhaustiveAligner
 rotational, translational and flip alignment using real-space methods. More...
class  EMAN::RTFSlowExhaustiveAligner
 rotational, translational and flip alignment using exhaustive search. More...
class  EMAN::SymAlignProcessor
 Aligns a particle with the specified symmetry into the standard orientation for that symmetry. More...
class  EMAN::RefineAligner
 refine alignment. More...
class  EMAN::RefineAlignerCG
 Conjugate gradient refine alignment. More...
class  EMAN::SymAlignProcessorQuat
 Aligns a particle with a specified symetry to its symmetry axis using the simplex multidimensional minimization algorithm. More...
class  EMAN::Refine3DAlignerGrid
 Refine alignment. More...
class  EMAN::Refine3DAlignerQuaternion
 Refine alignment. More...
class  EMAN::RT3DGridAligner
 rotational and translational alignment using a square qrid of Altitude and Azimuth values (the phi range is specifiable) This aligner is ported from the original tomohunter.py - it is less efficient than searching on the sphere (RT3DSphereAligner). More...
class  EMAN::RT3DSphereAligner
 3D rotational and translational alignment using spherical sampling, can reduce the search space based on symmetry. More...
class  EMAN::RT3DSymmetryAligner
 3D rotational symmetry aligner. More...
class  EMAN::FRM2DAligner
class  EMAN::CUDA_Aligner
class  EMAN::CUDA_multiref_aligner

Namespaces

namespace  EMAN
 

df3 file format (http://www.povray.org/documentation/view/3.6.1/374) Header: The df3 format consists of a 6 byte header of three 16-bit integers with high order byte first.


Functions

void EMAN::dump_aligners ()
map< string, vector< string > > EMAN::dump_aligners_list ()