EMAN2
Public Attributes
EMAN::MrcIO::FeiMrcHeader Struct Reference

Extended MRC format for tomography As used by Fei; original definition of extended header by Dave Agard and Bram Koster Contact Dustin Morado <Dustin.Morado@uth.tmc.edu> for details. More...

List of all members.

Public Attributes

int nx
int ny
int nz
int mode
int nxstart
int nystart
int nzstart
int mx
int my
int mz
float xlen
float ylen
float zlen
float alpha
float beta
float gamma
int mapc
int mapr
int maps
float amin
float amax
float amean
short ispg
short nsymbt
int next
short dvid
char extra [30]
short numintegers
short numfloats
short sub
short zfac
float min2
float max2
float min3
float max3
float min4
float max4
short idtype
short lens
short nd1
short nd2
short vd1
short vd2
float tiltangles [9]
float zorg
float xorg
float yorg
int nlabl
char labl [MRC_NUM_LABELS][MRC_LABEL_SIZE]

Detailed Description

Extended MRC format for tomography As used by Fei; original definition of extended header by Dave Agard and Bram Koster Contact Dustin Morado <Dustin.Morado@uth.tmc.edu> for details.

The extended MRC format consists of three parts: 1. the header (same as in the original MRC format definition) 2. the extended header 3. the data The MRC file is in little-endian (PC) format (IMOD can handle this). If you need to swap to big-endian (UNIX or Mac), all data must be swapped according to their data format.

All image data will be 2-byte integer.

Definition at line 154 of file mrcio.h.


Member Data Documentation

Definition at line 177 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 187 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 188 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 186 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 178 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 197 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 198 of file mrcio.h.

Definition at line 179 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 210 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 190 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

char EMAN::MrcIO::FeiMrcHeader::labl[MRC_NUM_LABELS][MRC_LABEL_SIZE]

Definition at line 223 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 211 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 182 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 183 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 184 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 205 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 207 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 209 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 204 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 206 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 208 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 162 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 169 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 170 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 171 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 212 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 213 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 194 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 222 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 192 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 200 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 199 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 156 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 165 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 157 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 166 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 158 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 167 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 202 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 216 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 214 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 215 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 173 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 219 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 174 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 220 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 203 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 175 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().

Definition at line 218 of file mrcio.h.

Referenced by EMAN::MrcIO::read_fei_header().


The documentation for this struct was generated from the following file: