Software available on the CIBR Clusters
Most tools available on standard Linux installations will be available:
- GCC collection
- Python
- Perl
- Ruby
- OpenMPI
- etc.
/usr/local is shared among all of the cluster nodes. So most extra software will be installed within that folder. You can find a lot of available tools simply by checking /usr/local/bin.
It is possible to use Matlab on the cluster, one node at a time. There is a special process for setting this up, which takes some effort. If you need to make use of this capability, please contact Larry Mayran (lmayran@bcm.edu).
Here is a list of some other tools we have currently installed for users on specific clusters:
Software |
Cluster |
Info |
EMAN2.1 |
Sphere,Prism |
Installed in /usr/local/EMAN2. Updated at irregular intervals. Set PATH, PYTHONPATH, LD_LIBRARY_PATH and EMAN2DIR appropriately to use it |