Once you're happy with the links, press 'c' to configure and then 'g' to generate the makefile.
8. Still inside build type:
make -j16 && make install
9. Add the EMAN2 folder (and the examples folder therein) to your PATH via the .bashrc file
export EMAN2DIR=${HOME}/username/EMAN2
export PATH=$EMAN2DIR/bin:$PATH
export PATH=$EMAN2DIR/examples:$PATH
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$EMAN2DIR/lib
export PYTHONPATH=$PYTHONPATH:$EMAN2DIR/lib:$EMAN2DIR/bin Once you refresh your shell by calling the shell in the terminal or by restarting your computer, everything should work properly. If the building process goes through without errors, the basic tests to see whether EMAN2 is actually installed properly, are
10. A. Run e2speedtest.py from the command line
10. B. Run e2.py from the command line
10. C. Run e2display.py from the command line (assuming you're not on a cluster)
If everything went well, the above should run without failure and you can begin using EMAN2. If not, please double check that you've followed all instructions. If you have, feel free to post to the EMAN2 google group for assistance.