Differences between revisions 2 and 22 (spanning 20 versions)
⇤ ← Revision 2 as of 2017-05-15 18:29:11 →
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Editor: TunayDurmaz
Comment: fix numbered lists
← Revision 22 as of 2017-06-09 17:40:32 → ⇥
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Editor: TunayDurmaz
Comment:
Deletions are marked like this. Additions are marked like this.
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 1. Download and install Anaconda/Miniconda (:TODO: links).  1. Download and install [[https://www.continuum.io/downloads | Anaconda2]] or [[https://conda.io/miniconda.html | Miniconda2]].
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 1. Checkout EMAN2 code from GitHub, (link here). {{{  1. Checkout EMAN2 code from [[https://github.com/cryoem/eman2 | GitHub:cryoem/eman2]]. {{{
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 1. Optionally, activate an existing conda environment, i.e. `source activate eman-env`.  1. Optionally, activate an existing conda environment, e.g. `source activate eman-env`. Skip this step if you don't understand this statement.
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 1. Out-of-source builds are recommended, so work in a directory outside of eman2 source. {{{  1. Install dependencies {{{
conda install eman-deps -c cryoem -c defaults -c conda-forge
}}} Listing the channels explicitly can be avoided by specifying them in <HOME>/.condarc, see conda documentation for more details, https://conda.io/docs/using/index.html.

 1. Out-of-source builds are recommended, so work in a directory outside of eman2 source (this is generally true, not EMAN2-specific). Note '''cmake''', not '''--( ccmake )--'''. CMake will automatically find the dependencies. If you want to change any of the CMake values, then use '''cmake-gui''' or '''ccmake'''. {{{
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export MACOSX_DEPLOYMENT_TARGET=10.7 # only for MacOSX (Yosemite, El Capitan)
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make -j make -j # 'make' should pick the number of available processors,
make -j4 # but you may specify the number if you like
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# == Linux ==

!!! UNDER CONSTRUCTION !!!

All platforms

The following instructions will work with cmake changes introduced in https://github.com/cryoem/eman2/pull/65.

Mac OS X, Linux

  1. Download and install Anaconda2 or Miniconda2.

  2. Checkout EMAN2 code from GitHub:cryoem/eman2. 

    cd <some-path-to-keep-eman2-source>
git clone https://github.com/cryoem/eman2.git

  3. Optionally, activate an existing conda environment, e.g. source activate eman-env. Skip this step if you don't understand this statement.

  4. Install dependencies 

    conda install eman-deps -c cryoem -c defaults -c conda-forge

    Listing the channels explicitly can be avoided by specifying them in <HOME>/.condarc, see conda documentation for more details, https://conda.io/docs/using/index.html.

  5. Out-of-source builds are recommended, so work in a directory outside of eman2 source (this is generally true, not EMAN2-specific). Note cmake, not ccmake . CMake will automatically find the dependencies. If you want to change any of the CMake values, then use cmake-gui or ccmake. 

    cd <build-directory>
export MACOSX_DEPLOYMENT_TARGET=10.7  # only for MacOSX (Yosemite, El Capitan)
cmake <some-path-to-keep-eman2-source>
make -j      # 'make' should pick the number of available processors,
make -j4     # but you may specify the number if you like
make install

Windows

EMAN2/COMPILE_EMAN2_ANACONDA-PRE-CONDA-ENVIRONMENTS (last edited 2019-11-01 14:27:54 by TunayDurmaz)