Differences between revisions 4 and 23 (spanning 19 versions)
⇤ ← Revision 4 as of 2017-05-15 18:40:54 →
Size: 916
Editor: TunayDurmaz
Comment: download links
← Revision 23 as of 2017-06-09 17:46:21 → ⇥
Size: 1577
Editor: TunayDurmaz
Comment:
Deletions are marked like this. Additions are marked like this.
Line 9: Line 9:
 1. Download and install [[https://www.continuum.io/downloads | Anaconda2]]/[[https://conda.io/miniconda.html | Miniconda2]].  1. Download and install [[https://www.continuum.io/downloads | Anaconda2]] or [[https://conda.io/miniconda.html | Miniconda2]].
Line 17: Line 17:
 1. Install dependencies ('''Work-In-Progress''')
   1. `eman.yaml`
   1. meta-package		  1. Optionally, activate an existing conda environment, e.g. `source activate eman-env`. Skip this step if you don't understand this statement.
Line 21: Line 19:
 1. Optionally, activate an existing conda environment, i.e. `source activate eman-env`.  1. Install dependencies {{{
conda install eman-deps -c cryoem -c defaults -c conda-forge
}}} Listing the channels explicitly can be avoided by specifying them in <HOME>/.condarc, see conda documentation for more details, https://conda.io/docs/using/index.html.
Line 23: Line 23:
 1. Out-of-source builds are recommended, so work in a directory outside of eman2 source. {{{  1. Out-of-source builds are recommended, so work in a directory outside of eman2 source (this is generally true, not EMAN2-specific). Note '''cmake''', not '''--( ccmake )--'''. CMake will automatically find the dependencies. If you want to change any of the CMake values, then use '''cmake-gui''' or '''ccmake'''. {{{
Line 26: Line 26:
cmake <some-path-to-keep-eman2-source>
make -j		 export MACOSX_DEPLOYMENT_TARGET=10.7 # only for MacOSX (Yosemite, El Capitan)
cmake <some-path-to-keep-eman2-source> -DENABLE_CONDA=ON
make -j # 'make' should pick the number of available processors,
make -j4 # but you may specify the number if you like
Line 31: Line 33:
# == Linux ==

!!! UNDER CONSTRUCTION !!!

All platforms

The following instructions will work with cmake changes introduced in https://github.com/cryoem/eman2/pull/65.

Mac OS X, Linux

  1. Download and install Anaconda2 or Miniconda2.

  2. Checkout EMAN2 code from GitHub:cryoem/eman2. 

    cd <some-path-to-keep-eman2-source>
git clone https://github.com/cryoem/eman2.git

  3. Optionally, activate an existing conda environment, e.g. source activate eman-env. Skip this step if you don't understand this statement.

  4. Install dependencies 

    conda install eman-deps -c cryoem -c defaults -c conda-forge

    Listing the channels explicitly can be avoided by specifying them in <HOME>/.condarc, see conda documentation for more details, https://conda.io/docs/using/index.html.

  5. Out-of-source builds are recommended, so work in a directory outside of eman2 source (this is generally true, not EMAN2-specific). Note cmake, not ccmake . CMake will automatically find the dependencies. If you want to change any of the CMake values, then use cmake-gui or ccmake. 

    cd <build-directory>
export MACOSX_DEPLOYMENT_TARGET=10.7  # only for MacOSX (Yosemite, El Capitan)
cmake <some-path-to-keep-eman2-source> -DENABLE_CONDA=ON
make -j      # 'make' should pick the number of available processors,
make -j4     # but you may specify the number if you like
make install

Windows

EMAN2/COMPILE_EMAN2_ANACONDA-PRE-CONDA-ENVIRONMENTS (last edited 2019-11-01 14:27:54 by TunayDurmaz)