Differences between revisions 5 and 19 (spanning 14 versions)
⇤ ← Revision 5 as of 2017-05-15 19:59:21 →
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Editor: TunayDurmaz
Comment: install dependencies with meta-package
← Revision 19 as of 2017-06-09 04:03:17 → ⇥
Size: 1244
Editor: TunayDurmaz
Comment:
Deletions are marked like this. Additions are marked like this.
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 1. Download and install [[https://www.continuum.io/downloads | Anaconda2]]/[[https://conda.io/miniconda.html | Miniconda2]].  1. Download and install [[https://www.continuum.io/downloads | Anaconda2]] or [[https://conda.io/miniconda.html | Miniconda2]].
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 1. Optionally, activate an existing conda environment, e.g. `source activate eman-env`. Skip this step if you don't understand this statement.
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conda install eman-meta -c cryoem -c defaults -c conda-forge export MACOSX_DEPLOYMENT_TARGET=10.7 # only for MacOSX (Yosemite, El Capitan)
conda install eman-deps -c cryoem -c defaults -c conda-forge
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 1. Optionally, activate an existing conda environment, i.e. `source activate eman-env`.

 1. Out-of-source builds are recommended, so work in a directory outside of eman2 source. {{{		  1. Out-of-source builds are recommended, so work in a directory outside of eman2 source (this is generally true, not EMAN2-specific). Note '''cmake''', not '''--( ccmake )--'''. {{{
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make -j make -j # make should pick the number of available processors,
make -j4 # but you may specify the number if you like
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# == Linux ==

!!! UNDER CONSTRUCTION !!!

All platforms

The following instructions will work with cmake changes introduced in https://github.com/cryoem/eman2/pull/65.

Mac OS X, Linux

  1. Download and install Anaconda2 or Miniconda2.

  2. Checkout EMAN2 code from GitHub:cryoem/eman2. 

    cd <some-path-to-keep-eman2-source>
git clone https://github.com/cryoem/eman2.git

  3. Optionally, activate an existing conda environment, e.g. source activate eman-env. Skip this step if you don't understand this statement.

  4. Install dependencies 

    export MACOSX_DEPLOYMENT_TARGET=10.7  # only for MacOSX (Yosemite, El Capitan)
conda install eman-deps -c cryoem -c defaults -c conda-forge

  5. Out-of-source builds are recommended, so work in a directory outside of eman2 source (this is generally true, not EMAN2-specific). Note cmake, not ccmake . 

    cd <build-directory>
cmake <some-path-to-keep-eman2-source>
make -j  # make should pick the number of available processors,
make -j4 # but you may specify the number if you like
make install

Windows

EMAN2/COMPILE_EMAN2_ANACONDA-PRE-CONDA-ENVIRONMENTS (last edited 2019-11-01 14:27:54 by TunayDurmaz)