Differences between revisions 25 and 50 (spanning 25 versions)
Revision 25 as of 2009-06-30 18:11:24
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Revision 50 as of 2023-01-02 19:26:26
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Editor: TunayDurmaz
Comment: Build system
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==== Introductory concepts ====
 * [[EMAN2PythonStyleGuide|EMAN2 Python Programming Style Guide]]
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 * [[Eman2CProgQuickstart|EMAN2 C++ programming quickstart]]
 * [[Eman2DataStorage|EMAN2 data storage, format conversion and local database]]
 * [[EMAN2ImageFormats|Image Formats in EMAN2]]
 * [[Eman2DataStorage|EMAN2 data storage & format conversion]]
 * [[Eman2NumPy|Using NumPy with EMAN2]]
 * [[Eman2JSStorage|EMAN2 JSON file access from Python]]
 * [[Eman2BdbStorage|EMAN2 BDB access from Python]]
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 * [[EMAN1To2Translation|Limited Table of translations from EMAN1 functions -> EMAN2]]
 * [[EMAN2PMWorkflow|Modifying the EMAN2 projectmanager workflow]]
 * Specific object types
  * [[Eman2TransformInPython|Using the Transform object (python) (arbitrary 2-D and 3-D transformations)]]
  * [[Eman2Reconstructors|Using Reconstructor classes]]

==== Intermediate Concepts ====
 * [[Eman2CProgQuickstart|EMAN2 C++ programming quickstart]]
 * [[Eman2ProgOverview|How to add new capabilities to EMAN2 in C++]]
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 * [[Eman2TransformInPython|Using the Transform object in python/EMAN2]]
 * [[Eman2UsingCudaFromC++|The EMData class and CUDA ]]
 * [[Eman2FactoriesInPython| Abstract factories in python/EMAN2]]
 * [[EMAN1To2Translation|Limited Table of translations from EMAN1 functions -> EMAN2]]
 * [[EMAN2ImageFormats|Image Formats in EMAN2]]
 * [[Eman2Using3DWidget|Using the EMScene3D widget (3-D object display)]]
 * [[Eman2New3DItem|How to write an new Item3D widget for the EMScene3D widget]]
 * [[Eman2PMCustomization|Customizing the projectmanager workflow]]
 * [[EMAN2PMWorkflow|Tutorial for adding an e2program to projectmanager]]
 * [[Eman2AddingWizard| Adding a Wizard to projectmanager]]
 * [[Eman2ProgramingPM|Programming e2projectmanager.py]]
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 * [[http://blake.bcm.edu/eman2/doxygen_html/|Autogenerated Python/C++ Documentation (Doxygen)]] ==== Advanced Topics ====
 * [[Eman2UsingCudaFromC++|The EMData class and CUDA]]
 * [[Eman2FactoriesInPython|Abstract factories in python/EMAN2]] (Modular classes, like processors, projectors, reconstructors, etc.)
 * [[EMAN2/BuildSystem|Build System]]

==== Detailed Documentation on all Classes/Methods/Functions ====
 * [[http://blake.bcm.edu/doxygen|Autogenerated Python/C++ Documentation (Doxygen)]]
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Documentation for Python or C++ Programmers

Introductory concepts

Intermediate Concepts

Advanced Topics

Detailed Documentation on all Classes/Methods/Functions

  • Autogenerated Python/C++ Documentation (Doxygen)

    • There are a LOT of classes in the automatic docs. Basic images are represented by the EMData class
    • The EMData methods process, cmp, align, and project are modular methods with many available functions. Use dump_processors(), dump_cmps(), etc.
    • There are a few classes like analyzers and reconstructors which are not methods of EMData
    • Many utility functions are static members of EMUtil

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EMAN2/Library (last edited 2023-01-02 19:26:26 by TunayDurmaz)