Diff for "EMAN2/Library"

Differences between revisions 5 and 13 (spanning 8 versions)

Documentation for Python or C++ Programmers

[:EMAN2DevFAQ:EMAN2 developer's FAQ]
[:Eman2ProgQuickstart:EMAN2 programming quickstart]
[:Eman2DataStorage:EMAN2 data storage, format conversion and local database]
[:Eman2UsingFTGL:Using FTGL in python/EMAN2]
[:EMAN1To2Translation:Limited Table of translations from EMAN1 functions -> EMAN2]
[http://blake.bcm.edu/eman2/doxygen_html/ Autogenerated Python/C++ Documentation (Doxygen)]
- There are a LOT of classes in the automatic docs. Basic images are represented by the EMData class
- The EMData methods process, cmp, align, and project are modular methods with many available functions. Use dump_processors(), dump_cmps(), etc.
- There are a few classes like analyzers and reconstructors which are not methods of EMData
- Many utility functions are static members of EMUtil

-  ⇤ ← Revision 5 as of 2007-02-27 22:12:58 → 
  Size: 762
  Editor: SteveLudtke
  Comment:
+   ← Revision 13 as of 2008-08-15 15:26:35 → ⇥
  Size: 868
  Editor: DavidWoolford
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 1:
-Aside from the autogenerated docs:
 * Here is a [wiki:EMAN1To2Translation Table of translations from EMAN1 functions -> EMAN2]


Programming Internals:

EMAN2 uses [http://www.boost.org/libs/python/doc/ Boost.python] to wrap c++ functions to Python.

 [http://www.boost.org/libs/python/pyste/ Pyste] is a Boost.Python code generator to automate this process.

In EMAN2 there is a script create_boost_python in /eman2/libpyEM directory calls Pyste to create c++ wrapping files libpy***.cpp.

Then the c++ compiler will create libraries which contain all the Python function call of EMAN2. Current release of Pyste has a dificit for the default argument handling. So please replace two of your Pyste files in Python site-packages with attached files.
+=== Documentation for Python or C++ Programmers ===
 * [:EMAN2DevFAQ:EMAN2 developer's FAQ]
 * [:Eman2ProgQuickstart:EMAN2 programming quickstart]
 * [:Eman2DataStorage:EMAN2 data storage, format conversion and local database]
 * [:Eman2UsingFTGL:Using FTGL in python/EMAN2]
 * [:EMAN1To2Translation:Limited Table of translations from EMAN1 functions -> EMAN2]
 * [http://blake.bcm.edu/eman2/doxygen_html/ Autogenerated Python/C++ Documentation (Doxygen)]
  * There are a LOT of classes in the automatic docs. Basic images are represented by the EMData class
  * The EMData methods process, cmp, align, and project are modular methods with many available functions. Use dump_processors(), dump_cmps(), etc.
  * There are a few classes like analyzers and reconstructors which are not methods of EMData
  * Many utility functions are static members of EMUtil