Differences between revisions 7 and 13 (spanning 6 versions)
Revision 7 as of 2009-03-02 19:16:35
Size: 687
Comment:
Revision 13 as of 2009-03-02 20:59:06
Size: 1267
Comment:
Deletions are marked like this. Additions are marked like this.
Line 1: Line 1:
{{attachment:ctf.png}}
Line 2: Line 3:
<<TableOfContents>>
Line 3: Line 5:
attachment:ctf.png ---- /!\ '''Edit conflict - other version:''' ----
<<TableOfContents>>

---- /!\ '''Edit conflict - your version:''' ----

---- /!\ '''End of edit conflict''' ----
== CTF processing in 3 stages ==
Line 7: Line 15:
== Auto fitting == === Auto fitting ===
Line 12: Line 20:
== Fine tuning == === Fine tuning ===
Line 18: Line 26:
== Write output ==
=
== Write output ===
Line 26: Line 35:
You can combine more than command would have worked if you had used a command like this: == Processing multiple images simultaneously ==
Line 28: Line 37:
e2ctf takes multiple images as input, so you can use commands like this:

{{{
e2ctf.py *.img --phaseflip --wiener
}}}

== Combining stages into a single command ==

You can combine more than one of the e2ctf processing stages into a single command. For instance you can run automated fitting and force the opening of the GUI in a with a single command like this:

{{{
Line 29: Line 49:
}}}

ctf.png

e2ctf


/!\ Edit conflict - other version:



/!\ Edit conflict - your version:



/!\ End of edit conflict


CTF processing in 3 stages

To get familiar with how e2ctf.py works, try separating the way you using e2ctf.py into three stages:

Auto fitting

e2ctf.py  1.img --voltage=200 --apix=2 --cs=3.2 --auto_fit

Fine tuning

(save any changes you make with the Save Parms button)

e2ctf.py  1.img --gui

Write output

e2ctf.py 1.img --phaseflip --wiener

The output will be in the particles directory. Also, you can supply more than one image as input to e2ctf.py.

Processing multiple images simultaneously

e2ctf takes multiple images as input, so you can use commands like this:

e2ctf.py *.img --phaseflip --wiener

Combining stages into a single command

You can combine more than one of the e2ctf processing stages into a single command. For instance you can run automated fitting and force the opening of the GUI in a with a single command like this:

e2ctf.py  1.img --voltage=200 --apix=2 --cs=3.2 --auto_fit --gui

EMAN2/Programs/e2ctf (last edited 2010-06-17 19:16:50 by SteveLudtke)