e2initialmodel.py
This program will take a set of class-averages/projections and build a set of 3-D models suitable for use as initial models in single particle reconstruction. The set is sorted in order of quality (best one is numbered 1).
This program uses a very simple method. It starts with completely random (but filtered and masked) initial models.
Options:
|
--input |
string |
The name of the image containing the particle data |
|
--iter |
int |
The total number of refinement iterations to perform |
|
--tries |
int |
The number of different initial models to generate in search of a good one |
|
--sym |
string |
Specify symmetry - choices are: c<n>, d<n>, h<n>, tet, oct, icos |
|
--savemore |
bool |
Will cause intermediate results to be written to flat files |
|
--orientgen |
string |
The type of orientation generator. Default is safe. See e2help.py orientgens |
|
--dbls |
string |
data base list storage, used by the workflow. You can ignore this argument. |
-v |
--verbose |
int |
verbose level [0-9], higner number means higher level of verboseness |