Differences between revisions 1 and 7 (spanning 6 versions)

e2tomoboxer

This program is used for interactive tomographic single particle picking (locating and extracting subtomograms).

Options

-B	--boxsize	int	Box size in pixels
	--inmemory	bool	This will read the entire tomogram into memory. Much faster, but you must have enough ram !
	--yshort	bool	This means you have a file where y is the short axis
	--apix	float	Override the A/pix value stored in the tomogram header
-h	--help	bool	show this help message and exit
-v	--verbose	int	verbose level [0-9], higner number means higher level of verboseness

USAGE

e2tomoboxer.py tomogram.rec --yshort --inmemory

If you don't provide the --inmemory option, the data will be read from disk, opposed to being read from memory (which is faster).

Provide the --yshort option if the shortest dimension of your tomogram (the "ice thickness") is along the y axis (for example, 4096 x 500 x 4096).

-  ⇤ ← Revision 1 as of 2011-03-21 12:57:45 → 
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+   ← Revision 7 as of 2011-03-22 19:21:44 → ⇥
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  Editor: jgalaz
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{{{
e2tomoboxer.py tomogram.rec --yshort --inmemory 
}}}
If you don't provide the ''--inmemory'' option, the data will be read from disk, opposed to being read from memory (which is faster).

Provide the ''--yshort'' option if the shortest dimension of your tomogram (the "ice thickness") is along the y axis (for example, 4096 x 500 x 4096).