Diff for "EMAN2/Python3"

Differences between revisions 1 and 29 (spanning 28 versions)

Contents

Python 3 Transition Environments
Python 3 Environments

Python 3 Transition Environments

Phase 1: Upgrade CMake to 3.14

PR: Upgrade CMake to 3.14

Install cmake=3.14 and eman-deps=15.1.

```
   1 conda install eman-deps=15.1 cmake=3.14 -c cryoem -c defaults -c conda-forge
```

Phase 2: Test Boost 1.64

PR: Upgrade Boost to 1.64

```
   1 conda install eman-deps=16.1 cmake=3.14 boost=1.64 -c cryoem -c defaults -c conda-forge
```

Phase 3: Test Boost 1.66

PR: Build with Boost versions 1.65-1.66

```
   1 conda install eman-deps=16.1 cmake=3.14 boost=1.66 -c cryoem -c defaults -c conda-forge
```

Phase 4: Decide Boost Version

PR: Build with Boost versions 1.67-1.69

   1 conda install eman-deps=17.1 cmake=3.14 boost=1.67 -c cryoem -c defaults -c conda-forge
   2 conda install eman-deps=17.1 cmake=3.14 boost=1.68 -c cryoem -c defaults -c conda-forge
   3 conda install eman-deps=17.1 cmake=3.14 boost=1.69 -c cryoem -c defaults -c conda-forge

Python 3 Environments

No python 3 environments yet.

-  ⇤ ← Revision 1 as of 2019-05-18 10:42:26 → 
  Size: 1368
  Editor: TunayDurmaz
  Comment: Initial setup and usage of python 3 environments
+   ← Revision 29 as of 2019-11-03 17:16:55 → ⇥
  Size: 1285
  Editor: TunayDurmaz
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
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-== Setup Python 3 Environment ==
+<<TableOfContents()>>
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-=== Existing Miniconda/Anaconda Installations ===
+== Python 3 Transition Environments ==
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-. Create a new environment with python 3{{{
conda create -n eman-deps-15 eman-deps=15 -c cryoem/label/py3 -c cryoem -c defaults -c conda-forge
+=== Phase 1: Upgrade CMake to 3.14 ===
[[https://github.com/cryoem/eman2/pull/407|PR: Upgrade CMake to 3.14]]

Install cmake=3.14 and eman-deps=15.1.
 {{{#!highlight bash
conda install eman-deps=15.1 cmake=3.14 -c cryoem -c defaults -c conda-forge
-Line 8:
+Line 13:
-. Use the activation command printed at the end of the previous command's run to activate the new conda environment {{{
conda activate eman-deps-15
or
source activate eman-deps-15
}}}
 1. To switch to another conda environment, first deactivate your current environment{{{
conda deactivate
or
source deactivate
+=== Phase 2: Test Boost 1.64 ===
[[https://github.com/cryoem/eman2/pull/408|PR: Upgrade Boost to 1.64]]

 {{{#!highlight bash
conda install eman-deps=16.1 cmake=3.14 boost=1.64 -c cryoem -c defaults -c conda-forge
-Line 20:
+Line 22:
-=== New Miniconda Installations ===
+=== Phase 3: Test Boost 1.66 ===
[[https://github.com/cryoem/eman2/pull/410|PR: Build with Boost versions 1.65-1.66]]
-Line 22:
+Line 25:
-. Download and install [[https://repo.continuum.io/miniconda/|Miniconda]].
 1. Add the new installation to PATH.{{{
export PATH=<new miniconda path>/bin:$PATH
+ {{{#!highlight bash
conda install eman-deps=16.1 cmake=3.14 boost=1.66 -c cryoem -c defaults -c conda-forge
-Line 26:
+Line 28:
-. Update conda {{{
conda update conda -c defaults
}}}
 1. Install eman-deps with python 3{{{
conda install eman-deps=15 -c cryoem/label/py3 -c cryoem -c defaults -c conda-forge
+=== Phase 4: Decide Boost Version ===
[[https://github.com/cryoem/eman2/pull/409|PR: Build with Boost versions 1.67-1.69]]

 {{{#!highlight bash
conda install eman-deps=17.1 cmake=3.14 boost=1.67 -c cryoem -c defaults -c conda-forge
conda install eman-deps=17.1 cmake=3.14 boost=1.68 -c cryoem -c defaults -c conda-forge
conda install eman-deps=17.1 cmake=3.14 boost=1.69 -c cryoem -c defaults -c conda-forge
-Line 34:
+Line 39:
-== Build ==
 1. Activate the python 3 environment, if it is a conda environment{{{
conda activate eman-deps-15
or
source activate eman-deps-15
}}} or edit PATH to have the miniconda installation with python 3 as the first entry.
 1. Move into your build directory {{{
cd <python 3 build directory>
}}}
 1. Build and install {{{
cmake <eman2 source directory>
make
make install
}}}
+== Python 3 Environments ==

No python 3 environments yet.