Differences between revisions 3 and 4
⇤ ← Revision 3 as of 2019-07-03 04:28:13 →
Size: 3115
Editor: TunayDurmaz
Comment: upgraded cmake, unpinned boost
← Revision 4 as of 2019-07-09 05:14:25 → ⇥
Size: 4447
Editor: TunayDurmaz
Comment: boost 1.64
Deletions are marked like this. Additions are marked like this.
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== Setup Python 2 Environment with Boost 1.64 ==

[[https://github.com/cryoem/eman2/pull/408|PR: Upgrade Boost to 1.64]]

=== New Miniconda Installations ===

 1. Download and install [[https://repo.continuum.io/miniconda/|Miniconda]].
 1. Add the new installation to PATH.{{{
export PATH=<new miniconda path>/bin:$PATH
}}}
 1. Install eman-deps with cmake 3.14.{{{
conda config --set auto_update_conda False
conda install conda=4.6.14
conda install eman-deps=14.3 cmake=3.14 boost=1.64 conda=4.6.14 -c cryoem/label/boost -c cryoem -c defaults -c conda-forge
}}}



=== Existing Miniconda/Anaconda Installations ===

 1. Pin your conda, you need to do this only once. Skip this step, if you have already done it.{{{
conda config --set auto_update_conda False
conda install conda=4.6.14
}}}
 1. Create a new environment.{{{
conda create -n eman-deps-14.2 eman-deps=14.3 cmake=3.14 boost=1.64 -c cryoem/label/boost -c cryoem -c defaults -c conda-forge
}}}
 1. Use the activation command printed at the end of the previous command's run to activate the new conda environment.{{{
conda activate eman-deps-14.3
or
source activate eman-deps-14.3
}}}
 1. To switch to another conda environment, first deactivate your current environment.{{{
conda deactivate
or
source deactivate
}}}
Line 66: Line 107:
conda create -n eman-deps-14.2 eman-deps=14.3 cmake=3.14 -c cryoem/label/boost -c cryoem -c defaults -c conda-forge conda create -n eman-deps-14.2 eman-deps=14.3 cmake=3.14 boost=1.66 -c cryoem/label/boost -c cryoem -c defaults -c conda-forge

Setup Python 2 Environment With CMake 3.14

PR: Upgrade CMake to 3.14

New Miniconda Installations

  1. Download and install Miniconda.

  2. Add the new installation to PATH.

    export PATH=<new miniconda path>/bin:$PATH

  3. Install eman-deps with cmake 3.14.

    conda config --set auto_update_conda False
conda install conda=4.6.14
conda install eman-deps=14.2 cmake=3.14 conda=4.6.14 -c cryoem/label/dev -c cryoem -c defaults -c conda-forge

Existing Miniconda/Anaconda Installations

  1. Pin your conda, you need to do this only once. Skip this step, if you have already done it.

    conda config --set auto_update_conda False
conda install conda=4.6.14

  2. Create a new environment.

    conda create -n eman-deps-14.2 eman-deps=14.2 cmake=3.14 -c cryoem/label/dev -c cryoem -c defaults -c conda-forge

  3. Use the activation command printed at the end of the previous command's run to activate the new conda environment.

    conda activate eman-deps-14.2
or
source activate eman-deps-14.2

  4. To switch to another conda environment, first deactivate your current environment.

    conda deactivate
or
source deactivate

Setup Python 2 Environment with Boost 1.64

PR: Upgrade Boost to 1.64

New Miniconda Installations

  1. Download and install Miniconda.

  2. Add the new installation to PATH.

    export PATH=<new miniconda path>/bin:$PATH

  3. Install eman-deps with cmake 3.14.

    conda config --set auto_update_conda False
conda install conda=4.6.14
conda install eman-deps=14.3 cmake=3.14 boost=1.64 conda=4.6.14 -c cryoem/label/boost -c cryoem -c defaults -c conda-forge

Existing Miniconda/Anaconda Installations

  1. Pin your conda, you need to do this only once. Skip this step, if you have already done it.

    conda config --set auto_update_conda False
conda install conda=4.6.14

  2. Create a new environment.

    conda create -n eman-deps-14.2 eman-deps=14.3 cmake=3.14 boost=1.64 -c cryoem/label/boost -c cryoem -c defaults -c conda-forge

  3. Use the activation command printed at the end of the previous command's run to activate the new conda environment.

    conda activate eman-deps-14.3
or
source activate eman-deps-14.3

  4. To switch to another conda environment, first deactivate your current environment.

    conda deactivate
or
source deactivate

Setup Python 2 Environment with Boost 1.66

PR: Build with Boost versions 1.65-1.66

New Miniconda Installations

  1. Download and install Miniconda.

  2. Add the new installation to PATH.

    export PATH=<new miniconda path>/bin:$PATH

  3. Install eman-deps with cmake 3.14.

    conda config --set auto_update_conda False
conda install conda=4.6.14
conda install eman-deps=14.3 cmake=3.14 boost=1.66 conda=4.6.14 -c cryoem/label/boost -c cryoem -c defaults -c conda-forge

Existing Miniconda/Anaconda Installations

  1. Pin your conda, you need to do this only once. Skip this step, if you have already done it.

    conda config --set auto_update_conda False
conda install conda=4.6.14

  2. Create a new environment.

    conda create -n eman-deps-14.2 eman-deps=14.3 cmake=3.14 boost=1.66 -c cryoem/label/boost -c cryoem -c defaults -c conda-forge

  3. Use the activation command printed at the end of the previous command's run to activate the new conda environment.

    conda activate eman-deps-14.3
or
source activate eman-deps-14.3

  4. To switch to another conda environment, first deactivate your current environment.

    conda deactivate
or
source deactivate

Build

Checkout a branch and build as usual.

  1. Update eman2 source.

    cd <source directory>
git checkout <branch>
git pull --rebase

  2. Activate conda environment, if it is a conda environment.

    conda activate <env-name>
or
source activate <env-name>
    or edit PATH to have the miniconda installation as the first entry.

  3. Move into your build directory.

    cd <build directory>

  4. Build and install.

    cmake <eman2 source directory>
make
make install