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| These are short (<10 min each) video demos of various aspects of the EMAN2 system. They are also available on [[http://www.youtube.com|YouTube]], search for sludtke42. | |
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| These are short (<10 min each) video demos of various aspects of the EMAN2 system. They are also available on YouTube. |
Note that these are a work in progress, those that aren't clickable as links do not yet exists. |
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| === Introduction === * Overview of the EMAN2 system * Introduction to EMAN2 GUI (Graphical User Interface) * Installing EMAN2 |
== Introduction == .1.0 [[http://blake.bcm.edu/dl/eman2/1.0.EMAN2_GUI_Intro_480.mov|Introduction to EMAN2 GUI (Graphical User Interface)]] .1.1 [[http://blake.bcm.edu/dl/eman2/1.1.intro_final.mov|Overview of the EMAN2 system]] .1.2 Installing EMAN2 |
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| === Users === * Introduction to Command-line programs * Workflow Interface * Single Particle Reconstruction * Starting a Project * Picking Particles * CTF Correction * Building Sets * 2-D Reference Free Class Averages * Making an Initial Model * Running a Refinement * Evaluating your Results * Single Particle Tomography * Introduction |
== Users == .2 Overview for Users .2.1 Introduction to Command-line programs .2.2 Workflow Interface .2.2.1 Single Particle Reconstruction .2.2.1.1 Starting a Project .2.2.1.2 Picking Particles .2.2.1.3 CTF Correction .2.2.1.4 Building Sets .2.2.1.5 2-D Reference Free Class Averages .2.2.1.6 Making an Initial Model .2.2.1.7 Running a Refinement .2.2.1.8 Evaluating your Results .2.2.2 Single Particle Tomography .2.2.2.1 Introduction |
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| * Introduction to EMAN2 Programming * Python * Overview of Classes * C++ * Establishing a build environment |
.3. Introduction to EMAN2 Programming .3.1 Python (Quickstart) .3.1.1 Overview of Classes .3.2 C++ .3.2.1 Establishing a build environment == Longer presentations from workshops == * [[http://blake.grid.bcm.edu/dl/scandem_intro.mov|EMAN2 introduction from SCANDEM 2010 (30 min)]] * [[http://blake.grid.bcm.edu/dl/scandem_tutorial1.mov|First part of an EMAN2 demonstration session from SCANDEM 2010 (~2 hr)]] * [[http://blake.grid.bcm.edu/dl/scandem_tutorial2.mov|Second part of an EMAN2 demonstration session from SCANDEM 2010 (~2 hr)]] |
Video Tutorials for EMAN2
These are short (<10 min each) video demos of various aspects of the EMAN2 system. They are also available on YouTube, search for sludtke42.
Note that these are a work in progress, those that aren't clickable as links do not yet exists.
Introduction
- 1.2 Installing EMAN2
Users
- 2 Overview for Users
- 2.1 Introduction to Command-line programs
- 2.2 Workflow Interface
- 2.2.1 Single Particle Reconstruction
- 2.2.1.1 Starting a Project
- 2.2.1.2 Picking Particles
- 2.2.1.3 CTF Correction
- 2.2.1.4 Building Sets
- 2.2.1.5 2-D Reference Free Class Averages
- 2.2.1.6 Making an Initial Model
- 2.2.1.7 Running a Refinement
- 2.2.1.8 Evaluating your Results
- 2.2.2 Single Particle Tomography
- 2.2.2.1 Introduction
- 2.2.1 Single Particle Reconstruction
Programmers
- 3. Introduction to EMAN2 Programming
- 3.1 Python (Quickstart)
- 3.1.1 Overview of Classes
- 3.2 C++
- 3.2.1 Establishing a build environment