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| These are short (<10 min each) video demos of various aspects of the EMAN2 system. They are also available on [[http://www.youtube.com|YouTube]]. | These are short (<10 min each) video demos of various aspects of the EMAN2 system. They are also available on [[http://www.youtube.com|YouTube]], search for sludtke42. |
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| Note that these are a work in progress, those that aren't clickable as links do not yet exists. | Note also that these are in Quicktime format. If you want to watch them fullscreen, you will need to download them to your machine, then play the local copy. If you watch in the browser the display size will be restricted. ''This is still a work in progress. Only a portion of these planned videos have been completed'' |
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| 1. [[http://blake.bcm.edu/dl/eman2/1.1.intro_final.mov|Overview of the EMAN2 system]] 1. Introduction to EMAN2 GUI (Graphical User Interface) 1. Installing EMAN2 * [[http://blake.grid.bcm.edu/dl/scandem_intro.mov|EMAN2 introduction from SCANDEM 2010 (30 min)]] |
.1.0 [[http://blake.bcm.edu/dl/EMAN2/1.0.EMAN2_GUI_Intro_480.mov|Introduction to EMAN2 GUI (Graphical User Interface)]] .1.1 [[http://blake.bcm.edu/dl/EMAN2/1.1.intro_final.mov|Overview of the EMAN2 system]] .1.2 Installing EMAN2 |
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| 1. Introduction to Command-line programs 1. Workflow Interface 1. Single Particle Reconstruction 1. Starting a Project 1. Picking Particles 1. CTF Correction 1. Building Sets 1. 2-D Reference Free Class Averages 1. Making an Initial Model 1. Running a Refinement 1. Evaluating your Results 1. Single Particle Tomography 1. Introduction * [[http://blake.grid.bcm.edu/dl/scandem_tutorial1.mov|First part of an EMAN2 demonstration session from SCANDEM 2010 (~2 hr)]] * [[http://blake.grid.bcm.edu/dl/scandem_tutorial2.mov|Second part of an EMAN2 demonstration session from SCANDEM 2010 (~2 hr)]] |
.2 Overview for Users .2.1 Introduction to Command-line programs .2.2 Workflow Interface .2.2.1 Single Particle Reconstruction .2.2.1.1 Starting a Project .2.2.1.2 Picking Particles .2.2.1.3 CTF Correction .2.2.1.4 Building Sets .2.2.1.5 2-D Reference Free Class Averages .2.2.1.6 Making an Initial Model .2.2.1.7 Running a Refinement .2.2.1.8 Evaluating your Results .2.2.2 Single Particle Tomography .2.2.2.1 Introduction .2.3 Using EMAN2 from the Python Prompt .2.3.1 [[http://blake.bcm.edu/dl/EMAN2/2.3.1.eman2_interactive_fft.mov|Interactive Teaching with EMAN2 (real-time FFT demo)]] |
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| 1. Introduction to EMAN2 Programming 1. Python 1. Overview of Classes 1. C++ 1. Establishing a build environment |
.3. Introduction to EMAN2 Programming .3.1 Python (Quickstart) .3.1.1 Overview of Classes .3.2 C++ .3.2.1 Establishing a build environment == Longer presentations from workshops == * [[http://blake.grid.bcm.edu/dl/EMAN2/scandem_intro.mov|EMAN2 introduction from SCANDEM 2010 (30 min)]] * [[http://blake.grid.bcm.edu/dl/EMAN2/scandem_tutorial1.mov|First part of an EMAN2 demonstration session from SCANDEM 2010 (~2 hr)]] * [[http://blake.grid.bcm.edu/dl/EMAN2/scandem_tutorial2.mov|Second part of an EMAN2 demonstration session from SCANDEM 2010 (~2 hr)]] |
Video Tutorials for EMAN2
These are short (<10 min each) video demos of various aspects of the EMAN2 system. They are also available on YouTube, search for sludtke42.
Note also that these are in Quicktime format. If you want to watch them fullscreen, you will need to download them to your machine, then play the local copy. If you watch in the browser the display size will be restricted.
This is still a work in progress. Only a portion of these planned videos have been completed
Introduction
- 1.2 Installing EMAN2
Users
- 2 Overview for Users
- 2.1 Introduction to Command-line programs
- 2.2 Workflow Interface
- 2.2.1 Single Particle Reconstruction
- 2.2.1.1 Starting a Project
- 2.2.1.2 Picking Particles
- 2.2.1.3 CTF Correction
- 2.2.1.4 Building Sets
- 2.2.1.5 2-D Reference Free Class Averages
- 2.2.1.6 Making an Initial Model
- 2.2.1.7 Running a Refinement
- 2.2.1.8 Evaluating your Results
- 2.2.2 Single Particle Tomography
- 2.2.2.1 Introduction
- 2.2.1 Single Particle Reconstruction
- 2.3 Using EMAN2 from the Python Prompt
Programmers
- 3. Introduction to EMAN2 Programming
- 3.1 Python (Quickstart)
- 3.1.1 Overview of Classes
- 3.2 C++
- 3.2.1 Establishing a build environment