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| These are short (<10 min each) video demos of various aspects of the EMAN2 system. They are also available on [[http://www.youtube.com|YouTube]], search for sludtke42. | We are now hosting periodic live video-conferences/telecasts to discuss specific EMAN2 topics, in addition to some short tutorial videos. These telecasts are available live, and are recorded for later viewing on YouTube as well as directly on this site. |
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| ''This is still a work in progress. Only a portion of these planned videos have been completed'' | These tutorials are also generally available through [[http://www.youtube.com/user/sludtke42|my YouTube channel]], but '''if you are in a location where YouTube isn't accessible (China)''', many of these videos are also available from [[EMAN2/VideoTutorialsLocal]]. |
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| == Introduction == .1.0 [[http://blake.bcm.edu/dl/eman2/1.0.EMAN2_GUI_Intro_480.mov|Introduction to EMAN2 GUI (Graphical User Interface)]] .1.1 [[http://blake.bcm.edu/dl/eman2/1.1.intro_final.mov|Overview of the EMAN2 system]] .1.2 Installing EMAN2 |
== Full Tutorials (~1 hour) == * [[http://youtu.be/bUh9vJsq2ZE|One hour to subnanometer resolution - a quick runthrough of single particle refinement in EMAN2.1]] * [[http://youtu.be/mTJ4gH7EOUA|Introduction to basic image processing and visualization in EMAN2.1]] (WARNING: video messed up for first 5 minutes, but rest of session is fine) * [[http://youtu.be/dA5r3ikX5Qg|Exploring the output files from various EMAN2.1 programs]] (WARNING: again, there was a Google problem, near the beginning of the video) |
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| == Users == .2 Overview for Users .2.1 Introduction to Command-line programs .2.2 Workflow Interface .2.2.1 Single Particle Reconstruction .2.2.1.1 Starting a Project .2.2.1.2 Picking Particles .2.2.1.3 CTF Correction .2.2.1.4 Building Sets .2.2.1.5 2-D Reference Free Class Averages .2.2.1.6 Making an Initial Model .2.2.1.7 Running a Refinement .2.2.1.8 Evaluating your Results .2.2.2 Single Particle Tomography .2.2.2.1 Introduction |
== Short Topical Tutorials (10-15 min) == * [[https://youtu.be/Iov1wX8XsVQ|Comparing a PDB fragment to a CryoEM map by FSC, includes aligning, making a mask, etc.]] * [[https://youtu.be/jYYxtXm7cjQ|How to use e2filtertool for 3-D post-processing]] * [[https://youtu.be/tB3O5v_gYdg|2D Image Display Widget - Measuring, building masks, etc.]] |
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| === Programmers === .3. Introduction to EMAN2 Programming .3.1 Python (Quickstart) .3.1.1 Overview of Classes .3.2 C++ .3.2.1 Establishing a build environment |
== For Programmers == *[[http://youtu.be/eklwhwxKe7o|Introduction to EMAN2 programming in Python]] *[[http://youtu.be/HxFGHbGPJzI|Interactive Teaching with EMAN2 (real-time FFT demo)]] (Note: doesn't teach FFT's, but rather teaches HOW to teach FFTs using EMAN2) |
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| == Longer presentations from workshops == * [[http://blake.grid.bcm.edu/dl/scandem_intro.mov|EMAN2 introduction from SCANDEM 2010 (30 min)]] * [[http://blake.grid.bcm.edu/dl/scandem_tutorial1.mov|First part of an EMAN2 demonstration session from SCANDEM 2010 (~2 hr)]] * [[http://blake.grid.bcm.edu/dl/scandem_tutorial2.mov|Second part of an EMAN2 demonstration session from SCANDEM 2010 (~2 hr)]] |
== Somewhat obsolete presentations for EMAN2.0 == * [[http://blake.bcm.edu/dl/EMAN2/1.0.EMAN2_GUI_Intro_480.mov|Introduction to EMAN2 GUI (Graphical User Interface)]] * [[http://blake.bcm.edu/dl/EMAN2/1.1.intro_final.mov|Overview of the EMAN2 system]] * [[http://blake.grid.bcm.edu/dl/EMAN2/scandem_intro.mov|EMAN2 introduction from SCANDEM 2010 (30 min)]] * [[http://blake.grid.bcm.edu/dl/EMAN2/scandem_tutorial1.mov|First part of an EMAN2 demonstration session from SCANDEM 2010 (~2 hr)]] * [[http://blake.grid.bcm.edu/dl/EMAN2/scandem_tutorial2.mov|Second part of an EMAN2 demonstration session from SCANDEM 2010 (~2 hr)]] |
Video Tutorials for EMAN2
We are now hosting periodic live video-conferences/telecasts to discuss specific EMAN2 topics, in addition to some short tutorial videos. These telecasts are available live, and are recorded for later viewing on YouTube as well as directly on this site.
These tutorials are also generally available through my YouTube channel, but if you are in a location where YouTube isn't accessible (China), many of these videos are also available from EMAN2/VideoTutorialsLocal.
Full Tutorials (~1 hour)
One hour to subnanometer resolution - a quick runthrough of single particle refinement in EMAN2.1
Introduction to basic image processing and visualization in EMAN2.1 (WARNING: video messed up for first 5 minutes, but rest of session is fine)
Exploring the output files from various EMAN2.1 programs (WARNING: again, there was a Google problem, near the beginning of the video)
Short Topical Tutorials (10-15 min)
For Programmers
Interactive Teaching with EMAN2 (real-time FFT demo) (Note: doesn't teach FFT's, but rather teaches HOW to teach FFTs using EMAN2)