Results 26 - 50 of 121 results out of about 4266 pages. (1.76 seconds)
- EMAN1/Programs . . . 30 matches
- ...== EMAN1 Individual Programs ==
''There are over 200 command-line programs in EMAN, this list contains more detailed documentation for the most commonly used programs. [[http://bla...
- EMAN2/TransformConventions . . . 29 matches
- ...= This page is DEPRECATED =
Please refer to [[Eman2TransformInPython|using the Transform object in python/EMAN2]] for the latest. In fact this page should probably not exist
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...
- EMAN2/Important . . . 28 matches
- ...= Important Information =
== For Everyone ==
* '''Working with Images''' - EMAN2 has '''many''' [[EMAN2/Modular/Overview|general image processing methods]], and the list is conti...
- EMAN2/e2tomo . . . 27 matches
- ...
= EMAN2 Tomography Workflow Tutorial =
* This tutorial is best suited for EMAN2 built after 09/27/2018. Not everything described in the tutorial was functioning yet in the 2.22...
- EMAN2/Hdf5Format . . . 27 matches
- ...rmat adopted by numerous scientific disciplines. In the CryoEM community, it is used by EMAN2/SPARX/SPHIRE, Chimera (2 different variants), and may(?) have some support in recent I...
- EMAN2/Programs/e2refinemulti . . . 26 matches
- ...== e2refinemulti ==
This is a variant of the standard [[EMAN2/Programs/e2refine|e2refine]] program. This version performs so-called multi-model refinement. Rather than producing
a...
- EMAN2/TransformInPython . . . 25 matches
- ...er2.png}}
= What is a Transform? =
----
We use the [[http://blake.bcm.edu/doxygen/classEMAN_1_1Transform.html|Transform]] class for storing/managing Euler angles,translations, sca...
- EMAN2/FAQ . . . 25 matches
- ...Our [[https://groups.google.com/forum/#!forum/eman2|Google Group]] is now the primary place for ongoing EMAN2 discussions.
'''General:'''
* [[EMAN2/FAQ/CiteEman2|What paper shou...
- Eman2DataStorage . . . 24 matches
- ...== Image Data files in EMAN2 ==
Virtually all cryo-EM file formats are supported as well as some good generic formats. The default format used in EMAN2 processing is HDF5, which s...
- EMAN_COMPILE_MacOS_X . . . 23 matches
- ...= PREFACE =
This page contains instructions on compiling EMAN for OS X for use on a single machine. Instructions for a distributable build, that includes all dependencies inside a...
- EMAN2/VideoTutorials . . . 22 matches
- ...== Video Tutorials for EMAN2 ==
We are now hosting periodic live video-conferences/telecasts to discuss specific EMAN2 topics, in addition to some short tutorial videos. These tele...
- EMAN1 . . . 22 matches
- ...= EMAN 1.9 =
''released 02/2009''
'''''IMPORTANT NOTICE''''' - EMAN1 is now quite out of date, and is no longer being updated in any way. Modern standards require "gold standard" ...
- EMAN2/ProgramFiles . . . 20 matches
- ...= EMAN2 Output Files =
This page documents all of the various files produced by various tasks and workflows in EMAN2. While the format of the actual files will
be one of the stand...
- Eman2CProgQuickstart . . . 18 matches
- ... * [[http://blake.bcm.edu/eman2/coding_style.html|What is the EMAN2's coding style?]]
* [[http://blake.bcm.edu/eman2/adding_processor.html|How to add a new processor in EMAN2?]]
...
- EMAN2/Parallel/BuildMpi . . . 18 matches
- ...e many variants of MPI, and different users may
need different versions. In the case of EMAN2, OpenMPI, the most widely used MPI distribution, works well in almost all situations, ...
- EMAN . . . 18 matches
- ...= Welcome to the EMAN Wiki =
Most of the docs are editable by any user that has registered an account on the server. To prevent spam, you need to email sludtke@bcm.edu to get an a...
- EMAN2/Tutorials/make_a_projection . . . 17 matches
- ..., and you must be able to define your projection direction as a Transform object. See [[Eman2TransformInPython|Using the EMAN2 Transform class]] and the Transform [[EMAN2/Tutorials...
- EMAN2/ChangeLog . . . 17 matches
- ...suggest subscribing to or searching the [[https://groups.google.com/forum/?hl=en#!forum/eman2|Google Group]] when you have questions. We have resumed updating the ChangeLog here as...
- Eman2NFS . . . 16 matches
- ...= This page is obsolete =
== Using EMAN2 with shared filesystems (like NFS) ==
In many large groups, computers will be configured so users can login to multiple machines, and the...
- Eman2CprogQuickStart . . . 16 matches
- ... * [[http://blake.bcm.edu/eman2/coding_style.html|What is the EMAN2's coding style?]]
* [[http://blake.bcm.edu/eman2/adding_processor.html|How to add a new processor in EMAN2?]]
...
- Eman2CprogQuicjStart . . . 16 matches
- ... * [[http://blake.bcm.edu/eman2/coding_style.html|What is the EMAN2's coding style?]]
* [[http://blake.bcm.edu/eman2/adding_processor.html|How to add a new processor in EMAN2?]]
...
- Eman2CProgQuickStart . . . 16 matches
- ... * [[http://blake.bcm.edu/eman2/coding_style.html|What is the EMAN2's coding style?]]
* [[http://blake.bcm.edu/eman2/adding_processor.html|How to add a new processor in EMAN2?]]
...
- EMAN2DevFAQ . . . 16 matches
- ... * [[http://blake.bcm.edu/eman2/coding_style.html|What is the EMAN2's coding style?]]
* [[http://blake.bcm.edu/eman2/adding_processor.html|How to add a new processor in EMAN2?]]
...
- EMAN2/Install/BinaryInstallAnaconda . . . 16 matches
- ... are in reverse chronological order. The [[https://cryoem.bcm.edu/cryoem/downloads/view_eman2_version/25|Continuous Build]] is rebuilt daily and any time a developer makes a change...
- EMAN2PMWorkflow . . . 14 matches
- ...:
{{{#!highlight python
#!/usr/bin/env python
#
# GPL licensing info goes here
#
from EMAN2 import *
def main():
progname = os.path.basename(sys.argv[0])
usage = """prog...