Results 1 - 25 of 121 results out of about 4264 pages. (3.74 seconds)
- EMAN2/Eman1Transition/Eman1v2 . . . 73 matches
- ...= An overview of changes between EMAN1 and EMAN2 =
We have tried to preserve as many of the conventions from EMAN1 as possible, to limit the
difficulty in making the transition. F...
- EMAN2/COMPILE_EMAN2_ANACONDA-PRE-CONDA-ENVIRONMENTS . . . 44 matches
- ...ed Build, All Platforms =
These instructions are for building with '''!NumPy v1.13'''.
EMAN2 source lives on !GitHub, downloading the source is part of the instructions below. Sin...
- EMAN2/Eman1Transition/CommandLine . . . 39 matches
- ...= Transitioning from EMAN1 to EMAN2 with command line tools =
While the workflow is the correct choice for many users, we realize that some prefer to manipulate their data more di...
- EMAN2/Eman1Transition . . . 25 matches
- ...= Moving from EMAN1 to EMAN2 =
== A choice of paths ==
EMAN2 can be used in many different ways:
* A high-level integrated workflow interface
* Stand-alone GUI tools (like EMA...
- EMAN2/Eman1Transition/QuickStart . . . 23 matches
- ...== Porting an EMAN1 refinement project to EMAN2.3 ==
''Note : This page contains a simplified version of the EMAN2.1 tutorial, and assumes you are familiar with EMAN1. The full [[...
- EMAN1/FAQ . . . 117 matches
- ...== FAQ ==
This is the new EMAN Frequently Asked Questions page :
* YOU MUST CREATE AN ACCOUNT FOR YOURSELF TO EDIT THIS PAGE. Click on the Login button above, then follow the Use...
- EMAN_COMPILE_MacOS_X_for_Distribution . . . 115 matches
- ...
= PREFACE =
This page contains instructions on compiling EMAN for OS X in a format suitable for distribution for the 4 main OS X supported architectures: 32 and 64 bit PowerPC ...
- EMAN2/Eman1Transition/Python . . . 13 matches
- ...= EMAN2 scripting for EMAN1 users =
The EMAN2 python library has many similarities to EMAN1. The main image data class is even called EMData, just like EMAN1. The most significant...
- Eman2AppMetadata . . . 97 matches
- ...obsolete =
== Global dictionaries/parameters ==
=== 00image_counts database ===
Every EMAN2DB directory will contain an image count cache database which will contain a number of ...
- EMAN2 . . . 68 matches
- ...= EMAN2.99.47 =
Most of the pages are editable by any user that has registered an account on the server. To prevent spam, you need to email sludtke@bcm.edu to get an account on the...
- EMAN2/Install/BinaryInstallAnaconda/2.99 . . . 67 matches
- ...it odd, but this IS a release version''
== Choices ==
There are three ways to install EMAN2:
1. Traditional Binary Installation (includes Anaconda/Miniconda install)
* [[#Lin...
- EMAN2/Tutorials . . . 59 matches
- ...= EMAN2 Introductory Tutorials =
''Please note that we are continuously developing and updating the tutorials. Most tutorials include the necessary data. If you have a request for ...
- EMAN2/Install/SourceInstall . . . 57 matches
- ...
{{{#!html
<h1 style="margin-bottom:5px;"> Building EMAN2/SPARX/SPHIRE from Source </h1>
<p style="font-size:110%; text-align:center; margin-top:5px; margin-left:20px; margin-ri...
- EMAN2/Install/BinaryInstallAnaconda/ContinuousBuild . . . 51 matches
- ...<<TableOfContents()>>
= Conda Installation Instructions =
EMAN2 is now available as a conda package from our channel "cryoem" on anaconda.org. It can be installed via conda/m...
- EMAN2/Programs . . . 50 matches
- ...== EMAN2 Programs ==
'''This page is very incomplete, but running any EMAN2 program with the '--help' option will provide documentation for that program.'''
== Generic Docs ==
*...
- EMAN2/Install/SourceInstall/2.31 . . . 49 matches
- ...ed Build, All Platforms =
These instructions are for building with '''!NumPy v1.13'''.
EMAN2 source lives on !GitHub, downloading the source is part of the instructions below. Sin...
- EMAN2/Install . . . 46 matches
- ...= Installing EMAN2 / SPHIRE =
=== Conda Installation of eman-dev ===
[[EMAN2/Install/CondaInstall|Install EMAN2 in a conda environment]]
=== Binary Installation (most users sho...
- EMAN2/Install/BinaryInstallAnaconda/2.91 . . . 45 matches
- ... Instructions v2.91</h1>
}}}
<<TableOfContents()>>
'''''Note: If you need to install EMAN2 within an existing Anaconda installation, please follow the source installation instru...
- EMAN1/Install . . . 44 matches
- ...== EMAN1 Installation and Tips ==
''IMPORTANT NOTE FOR WINDOWS USERS'' : EMAN1 is NOT fully windows compatible. The GUI programs should largely work without problems, and many of t...
- EMAN2/e2TomoSmall . . . 41 matches
- ...= EMAN2 Tomography and Subtomogram/Subtilt Averaging Workflow Tutorial =
'''''Important note: Throughout the tutorial you will see a split between (small) and (large) instructions....
- EMAN2/Library . . . 40 matches
- ...== Documentation for Python or C++ Programmers ===
==== Introductory concepts ====
* [[EMAN2PythonStyleGuide|EMAN2 Python Programming Style Guide]]
* [[Eman2ProgQuickstart|EMAN2 ...
- EMAN2/Programs/e2refine . . . 37 matches
- ...== e2refine ==
This program is the heart of single particle reconstruction in EMAN2. It embodies the concept of an iterative 3-D single particle reconstruction in a single step, s...
- EMAN2/ImageFormats . . . 37 matches
- ...
<<TableOfContents>>
= Table of supported image formats in EMAN2 =
||Type ||Extension ||Read ||Write ||3D ||Image Stacks ||Volume Stacks ||Bit Trunc. ||Region I/O ||Comments ||
||...
- EMAN2/DatabaseWarning . . . 36 matches
- ...NOTE: This page really only applies to EMAN2.0x. If you are using EMAN2.1+, you should no longer have any of these issues, since BDB has been deprecated in favor of HDF and JSON fi...
- EMAN2/Concepts . . . 30 matches
- ...= EMAN2 Concepts and Conventions =
=== Box Size (Important) ===
* Particle [[EMAN2/BoxSize|box-size]] - Impacts quality and speed of reconstructions!
=== Data Storage ===
* Sup...