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EMAN2/Programs/e2refinetofrealign . . . 7 matches
... e2refinetofrealign = === Information === Note - this program is normally run via the EMAN2 [[EMAN2/Programs/e2projectmanager|Project Manager]]. This program will take various f...

2.9k - rev: 16 (current) last modified: 2013-07-09 20:44:50

EMAN2/Programs/e2display . . . 7 matches
...|[[EMAN2/Programs/emselector|EMAN2 File Browser]] | [[EMAN2/Programs/emimage2d|2D Display]] | [[EMAN2/Programs/emimagemx|2D Stack Display]] | [[EMAN2/Programs/emimage3d|3D Image D...

0.7k - rev: 6 (current) last modified: 2016-05-13 13:47:05

Eman2ImageMetadata . . . 6 matches
...== Metadata in EMAN2 == Most metadata in EMAN2 is stored either in JSON files (human readable & editable structured text files) or in the headers of the images themselves. These a...

0.3k - rev: 1 (current) last modified: 2013-08-11 18:10:56

EMAN2/e2gmm . . . 6 matches
...ons''' * '''THE e2gmm program is under active development. STRONGLY encourage using an EMAN2 snapshot or source version dated 12/2022 or later. Even with a current version you may...

23.4k - rev: 15 (current) last modified: 2022-12-05 14:00:10

EMAN2/Programs/e2refinetorelion3d . . . 6 matches
...= e2refinetorelion3d = === Information === This program is normally run via the EMAN2 [[EMAN2/Programs/e2projectmanager|Project Manager]]. ''e2refinetorelion3d.py'' is run after...

3.2k - rev: 19 (current) last modified: 2013-01-23 21:17:34

EMAN2/Programs/e2bdb . . . 6 matches
...= e2bdb.py = This is the main command-line program for manipulating EMAN2 BDB database files. Please read more about the [[Eman2DataStorage|BDB database]] itself. ||-c||--cleanu...

3.0k - rev: 4 (current) last modified: 2018-04-08 02:51:51

EMAN2/Parallel/Threaded . . . 6 matches
...=== Threaded Parallelism in EMAN2 === Most modern computers have at a minimum 2 'cores'. A decade ago this would have been called 2 CPUs, however, now you may still have 2 physica...

6.7k - rev: 10 (current) last modified: 2022-08-15 03:30:39

EMAN2/Install/CondaInstall . . . 6 matches
...=== Conda Installation of eman-dev === 1. [[EMAN2/Install/SourceInstall#Initial_Setup_.28one_time.29|Install Miniconda and mamba]]. 1. Run {{{#!highlight bash mamba create -n ...

0.2k - rev: 2 (current) last modified: 2023-02-03 08:28:03

Eman2PythonDoc/emboxerbase . . . 5 matches
...[[Eman2PythonDoc|EMAN2 Python Documentation Home]] = emboxerbase.py = ~+'''__Note: This documentation is in its very early stages and may not be reliable!__'''+~ <<TableOfConte...

0.9k - rev: 16 (current) last modified: 2009-08-27 19:24:50

EMAN2/Tutorials/RotateTranslate . . . 5 matches
...a (image) objects. A very thorough explanation of using the Transform is presented in [[Eman2TransformInPython|Using the EMAN2 Transform class]] and you are encouraged to at least ...

1.6k - rev: 17 (current) last modified: 2015-05-04 18:17:02

EMAN2/TomoSymmetry . . . 5 matches
...izing/classifying not entire symmetric particles, but on an individual subunit basis. EMAN2 has 2 primary methods to permit this in the new subtomogram averaging pipeline (using ...

9.0k - rev: 5 (current) last modified: 2023-04-06 12:58:53

EMAN2/Modular/Overview . . . 5 matches
...== Overview of modular functions in EMAN2 == EMAN2's modular function interface is one of its most powerful features, permitting a wide range of different algorithms to be selecte...

3.5k - rev: 1 (current) last modified: 2011-10-10 16:20:03

EMAN1/FAQ/HeterogeneousPhase . . . 5 matches
...and want to know where I can find information on the phase residuals of the data set in EMAN to see if it can reveal the extent of the heterogeneity of my data. '''A:''' What do ...

1.9k - rev: 7 (current) last modified: 2008-11-26 04:42:29

eman2Assertion . . . 4 matches
...'''How to use assertion in EMAN2?''' EMAN2 has wrapped standard assert call as Assert. The header file is "emassert.h" instead of standard <cassert> or <assert.h>. The assert call...

0.5k - rev: 7 (current) last modified: 2008-11-26 04:42:29

FAQ_EMAN_USING_20 . . . 4 matches
...How can I determine the symmetry of my particles ? '''Answer:''' This can be done in EMAN, though it doesn't use rotational power spectra. While we have played with rotational p...

3.3k - rev: 11 (current) last modified: 2009-01-14 15:57:40

EMAN2/SimulatedData . . . 4 matches
...ns. {{{e2help.py orientgen}}} for other possibilities * if your input map possesses [[EMAN2/Symmetry|symmetry]], you can specify --sym <symmetry>, though this isn't very meaningf...

4.7k - rev: 5 (current) last modified: 2019-09-19 15:29:48

EMAN2/Programs/e2workflow . . . 4 matches
...= e2workflow = EMAN2 uses a project management Workflow system to guide users through a series of steps embodying specific tasks, for example, single particle reconstruction. The ...

0.7k - rev: 3 (current) last modified: 2010-09-14 14:42:10

EMAN2/Programs/e2refinetorelion2d . . . 4 matches
...= e2refinetorelion2d = === Information === This program is normally run via the EMAN2 [[EMAN2/Programs/e2projectmanager|Project Manager]]. ''e2refinetorelion2d.py'' is typically...

2.2k - rev: 11 (current) last modified: 2013-01-23 21:17:53

EMAN2/Programs/e2refinetofrealign/e2refinetofrealigntutorial . . . 4 matches
...Notes: *The main documentation for ''e2refinetofrealign.py'' can be found [[EMAN2/Programs/e2refinetofrealign|here]] *This tutorial is designed with an assumption in mind: *Th...

0.4k - rev: 1 (current) last modified: 2013-07-09 20:38:48

EMAN2/Programs/e2project3d . . . 4 matches
...s == e2project3d.py == ||<35%><<TableOfContents>>|| Add your related questions to [[EMAN2/e2project3dfaq|e2project3d FAQ]]. A desciption of how EMAN demarcates the asymmetric ...

0.3k - rev: 2 (current) last modified: 2009-07-24 02:47:49

EMAN2/Programs/e2ctf . . . 4 matches
...= e2ctf = ||<<TableOfContents>> || {{attachment:ctf.png}} || == CTF Correction in EMAN2 == CTF correction in EMAN2 is performed on boxed out particles. There is a [[EMAN2/Theory/C...

2.4k - rev: 30 (current) last modified: 2010-06-17 19:16:50

EMAN2/Galleries . . . 4 matches
...= Gallery = * [[EMAN2/Galleries/Testimages|Test images]] * [[EMAN2/Programs/e2display|e2display features]] * [[EMAN2/e2desktop_gallery|e2desktop]] ---- ||{{attachment:newem3D...

0.2k - rev: 12 (current) last modified: 2011-06-09 12:14:50

FAQ_EMAN_USING_23 . . . 3 matches
...missing, and is very important. This problem can be tackeled three ways, described in [[EMAN1/FAQ/StructureFactor|this FAQ]]. If you're in the situation where you don't have x-ray ...

2.5k - rev: 7 (current) last modified: 2008-11-26 04:42:28

Eman2Metadata . . . 3 matches
...This page has moved: [[EMAN2/Eman2Metadata]]...

0.0k - rev: 1 (current) last modified: 2019-05-09 03:57:19

EMAN2/Tutorials/AddAndMultiply . . . 3 matches
...images that have the same dimensions {{{#!python [someone@localhost] e2.py Welcome to EMAN2 Prompt provided by IPython Enter '?' for ipython help In [3]: A = test_image(0) In ...

1.4k - rev: 13 (current) last modified: 2009-03-06 17:36:06

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