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| [[EMEN2]] is dependent on several other packages. With the exception of Python, which is generally up to date and well-packaged on most systems, I recommend downloading the latest version from the project's site and installing it, or using easy_install for the package if possible. (Linux/Mac package management systems often have out of date software.) | To run the EMEN2 server, Berkeley DB, bsddb3, and dateutil are required for basic functionality. If you want to run the web server, you will also need Twisted, Markdown, and Mako. Additional server features, such as thumbnails and image analysis, are provided by EMAN2 and ImageMagick. |
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| If I have specified a version, it is the minimum version I have tested EMEN2 with. I cannot guarantee success with versions earlier than noted. | Please note that we include all the EMEN2 dependencies listed below in the EMAN2 binary distribution. This is the recommended way to install and use EMEN2. See [[EMAN2]] for information about EMAN2. See [[EMEN2/Install]] for instructions on installing EMEN2 once all dependencies are installed. == Python Environment == * Python 2.6 or 2.7 * Note: do not use Python 3.0+ * http://www.python.org |
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| * Python 2.5+ (note: do not use Python 3.0) http://www.python.org |
== Core Database == |
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| * Berkeley DB 5.x+ * BDB is the storage and transactional backend for EMEN2 * Note: Relatively recent 4.8.2x release are probably OK as well * http://www.oracle.com/technology/software/products/berkeley-db/index.html |
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| * Berkeley DB 4.8.24+ BDB is the storage and transactional backend for EMEN2 * Note: I have not tested Berkeley DB 5.x http://www.oracle.com/technology/software/products/berkeley-db/index.html |
* bsddb3 5.x+ * Python bindings for Berkeley DB * Note: Relatively recent 4.8.2x release are probably OK as well * http://www.jcea.es/programacion/pybsddb.htm * "easy_install bsddb3" |
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| * dateutil * A library for accurate manipulation of dates and times * http://labix.org/python-dateutil * "easy_install dateutil" |
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| * bsddb3 4.8.4+ (latest) Python bindings for Berkeley DB * Note: I have not tested Berkeley DB 5.x http://www.jcea.es/programacion/pybsddb.htm "easy_install bsddb3" |
== Web Server == |
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| * Mako Templates (latest) * A simple, fast templating system for Python * http://www.makotemplates.org/ * "easy_install mako" |
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| * Mako Templates (latest) A simple, fast templating system for Python http://www.makotemplates.org/ "easy_install makotemplates" |
* Twisted 10.x+ * An event-driven networking engine written in Python * http://twistedmatrix.com/trac/ * "easy_install twisted" |
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| * Markdown * Simplified rich-text editing * "easy_install Markdown" |
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| * demjson (latest) A fast, compliant JSON module http://deron.meranda.us/python/demjson/ "easy_install demjson" * note: EMEN2 may use the Python json standard library in the future |
== Web Server: Optional == |
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| * EMAN2 (highly recommended) * EMAN2 is optionally used to generate browsable micrograph previews. * http://ncmi.bcm.edu/ncmi/software/counter_222/software_86 |
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| * Twisted 10.x+ An event-driven networking engine written in Python http://twistedmatrix.com/trac/ "easy_install twisted" |
* ImageMagick (recommended) * Thumbnail and document preview support for "normal" image formats (jpg, png, etc.) * Commonly installed on Linux * http://www.imagemagick.org/ |
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* PyYAML (latest) Configuration file is YAML-based "easy_install yaml" * pyOpenSSL Network encryption "easy_install pyOpenSSL" * EMAN2 EMAN2 is optionally used to generate browsable micrograph previews. http://ncmi.bcm.edu/ncmi/software/counter_222/software_86 |
* pyOpenSSL * Network encryption * "easy_install pyOpenSSL" |
EMEN2 Dependencies
To run the EMEN2 server, Berkeley DB, bsddb3, and dateutil are required for basic functionality. If you want to run the web server, you will also need Twisted, Markdown, and Mako. Additional server features, such as thumbnails and image analysis, are provided by EMAN2 and ImageMagick.
Please note that we include all the EMEN2 dependencies listed below in the EMAN2 binary distribution. This is the recommended way to install and use EMEN2. See EMAN2 for information about EMAN2.
See EMEN2/Install for instructions on installing EMEN2 once all dependencies are installed.
Python Environment
- Python 2.6 or 2.7
- Note: do not use Python 3.0+
Core Database
- Berkeley DB 5.x+
- BDB is the storage and transactional backend for EMEN2
- Note: Relatively recent 4.8.2x release are probably OK as well
http://www.oracle.com/technology/software/products/berkeley-db/index.html
- bsddb3 5.x+
- Python bindings for Berkeley DB
- Note: Relatively recent 4.8.2x release are probably OK as well
- "easy_install bsddb3"
- dateutil
- A library for accurate manipulation of dates and times
- "easy_install dateutil"
Web Server
- Mako Templates (latest)
- A simple, fast templating system for Python
- "easy_install mako"
- Twisted 10.x+
- An event-driven networking engine written in Python
- "easy_install twisted"
- Markdown
- Simplified rich-text editing
- "easy_install Markdown"
Web Server: Optional
- EMAN2 (highly recommended)
- EMAN2 is optionally used to generate browsable micrograph previews.
ImageMagick (recommended)
- Thumbnail and document preview support for "normal" image formats (jpg, png, etc.)
- Commonly installed on Linux
- pyOpenSSL
- Network encryption
- "easy_install pyOpenSSL"