Differences between revisions 15 and 27 (spanning 12 versions)

EMEN2 Dependencies

EMEN2 is dependent on several other packages. With the exception of Python, which is generally up to date and well-packaged on most systems, I recommend downloading the latest version from the project's site and installing it, or using easy_install for the package if possible. (Linux/Mac package management systems often have out of date software.)

Python 2.6+
- (note: do not use Python 3.0+)
- http://www.python.org
Berkeley DB 5.0.x
- BDB is the storage and transactional backend for EMEN2
- Note: Relatively recent 4.8.2x release are probably OK as well
- http://www.oracle.com/technology/software/products/berkeley-db/index.html
bsddb3 5.0.x
- Python bindings for Berkeley DB
- Note: Relatively recent 4.8.2x release are probably OK as well
- http://www.jcea.es/programacion/pybsddb.htm
- "easy_install bsddb3"
Mako Templates (latest)
- A simple, fast templating system for Python
- http://www.makotemplates.org/
- "easy_install mako"
Twisted 10.x+
- An event-driven networking engine written in Python
- http://twistedmatrix.com/trac/
- "easy_install twisted"
Markdown
- Simplified rich-text editing
- "easy_install Markdown"

Optional

pyOpenSSL
- Network encryption
- "easy_install pyOpenSSL"
EMAN2 (recommended)
- EMAN2 is optionally used to generate browsable micrograph previews.
- http://ncmi.bcm.edu/ncmi/software/counter_222/software_86
Matplotlib
- Plotting support
- Note: commonly installed with EMAN2
- "easy_install matplotlib"

-  ⇤ ← Revision 15 as of 2010-04-17 21:07:08 → 
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  Editor: SteveLudtke
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+   ← Revision 27 as of 2010-09-22 06:57:51 → ⇥
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  Editor: root
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-If I have specified a version, it is the minimum version I have tested EMEN2 with. I cannot guarantee success with versions earlier than noted.

 * Python 2.5+
+ * Python 2.6+
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+Line 8:
- * Berkeley DB 4.8.24+
+ * Berkeley DB 5.0.x
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-  * Note: Berkeley DB 5.x has not been tested
+  * Note: Relatively recent 4.8.2x release are probably OK as well
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- *  bsddb3 4.8.4+ (latest)
+ * bsddb3 5.0.x
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+Line 16:
-  * Note: Berkeley DB 5.x has not been tested
+  * Note: Relatively recent 4.8.2x release are probably OK as well
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+Line 19:
-Line 20:
+Line 22:
-  * http://www.makotemplates.org/ "easy_install makotemplates"
 * demjson (latest)
  * A fast, compliant JSON module
  * http://deron.meranda.us/python/demjson/ "easy_install demjson"
  * note: EMEN2 may use the Python json standard library in the future
+  * http://www.makotemplates.org/ 
  * "easy_install mako"
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+Line 25:
-* Twisted 10.x+
+ * Twisted 10.x+
  * An event-driven networking engine written in Python
  * http://twistedmatrix.com/trac/ 
  * "easy_install twisted"
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+Line 30:
- . An event-driven networking engine written in Python
 http://twistedmatrix.com/trac/ "easy_install twisted"
+ * Markdown
  * Simplified rich-text editing
  * "easy_install Markdown"
-Line 31:
+Line 34:
-* PyYAML (latest)
+== Optional ==
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- . Configuration file is YAML-based "easy_install yaml"
+ * pyOpenSSL
  * Network encryption 
  * "easy_install pyOpenSSL"
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+Line 40:
-* pyOpenSSL
+ * EMAN2 (recommended)
  * EMAN2 is optionally used to generate browsable micrograph previews.
  * http://ncmi.bcm.edu/ncmi/software/counter_222/software_86
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+Line 44:
- . Network encryption "easy_install pyOpenSSL"

* EMAN2

 . EMAN2 is optionally used to generate browsable micrograph previews.
 http://ncmi.bcm.edu/ncmi/software/counter_222/software_86
+ * Matplotlib
  * Plotting support
  * Note: commonly installed with EMAN2
  * "easy_install matplotlib"