Differences between revisions 15 and 45 (spanning 30 versions)
⇤ ← Revision 15 as of 2010-04-17 21:07:08 →
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← Revision 45 as of 2013-06-27 04:51:06 → ⇥
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Editor: IanRees
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[[EMEN2]] is dependent on several other packages. With the exception of Python, which is generally up to date and well-packaged on most systems, I recommend downloading the latest version from the project's site and installing it, or using easy_install for the package if possible. (Linux/Mac package management systems often have out of date software.)
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If I have specified a version, it is the minimum version I have tested EMEN2 with. I cannot guarantee success with versions earlier than noted. To run the EMEN2 server, Berkeley DB, bsddb3, and dateutil are required for basic functionality. If you want to run the web server, you will also need Twisted, Markdown, Mako, and jsonrpc. Additional server features, such as thumbnails and image analysis, are provided by EMAN2 and ImageMagick.
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 * Python 2.5+
  * (note: do not use Python 3.0+)		 Please note that we include all the EMEN2 dependencies listed below in the EMAN2 binary distribution. This is the recommended way to install and use EMEN2. See [[EMAN2]] for information about EMAN2.

See [[EMEN2/Install]] for instructions on installing EMEN2 once all dependencies are installed.

== Python Environment ==

 * Python 2.6 or 2.7
  * Note: do not use Python 3.0+
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 * Berkeley DB 4.8.24+

== Core Database ==

 * Berkeley DB 5.x+
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  * Note: Berkeley DB 5.x has not been tested   * Note: Relatively recent 4.8.2x release are probably OK as well
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 *  bsddb3 4.8.4+ (latest)
* bsddb3 5.x+
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  * Note: Berkeley DB 5.x has not been tested   * Note: Relatively recent 4.8.2x release are probably OK as well
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 * dateutil
  * A library for accurate manipulation of dates and times
  * http://labix.org/python-dateutil
  * "easy_install dateutil"

== Web Server ==
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  * http://www.makotemplates.org/ "easy_install makotemplates"
 * demjson (latest)
  * A fast, compliant JSON module
  * http://deron.meranda.us/python/demjson/ "easy_install demjson"
  * note: EMEN2 may use the Python json standard library in the future		   * http://www.makotemplates.org/
  * "easy_install mako"
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* Twisted 10.x+  * Twisted 10.x+
  * An event-driven networking engine written in Python
  * http://twistedmatrix.com/trac/
  * "easy_install twisted"
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 . An event-driven networking engine written in Python
 http://twistedmatrix.com/trac/ "easy_install twisted"		  * Markdown
  * Simplified rich-text editing
  * "easy_install Markdown"
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* PyYAML (latest)  * JSONRPC
  * http://pypi.python.org/pypi/jsonrpc
  * "easy_install jsonrpc"
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 . Configuration file is YAML-based "easy_install yaml"
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* pyOpenSSL == Web Server: Optional ==
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 . Network encryption "easy_install pyOpenSSL"  * EMAN2 (highly recommended)
  * EMAN2 is optionally used to generate browsable micrograph previews.
  * http://ncmi.bcm.edu/ncmi/software/counter_222/software_86
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* EMAN2  * ImageMagick (recommended)
  * Thumbnail and document preview support for "normal" image formats (jpg, png, etc.)
  * Commonly installed on Linux
  * http://www.imagemagick.org/
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 . EMAN2 is optionally used to generate browsable micrograph previews.
 http://ncmi.bcm.edu/ncmi/software/counter_222/software_86		  * pyOpenSSL
  * Network encryption
  * "easy_install pyOpenSSL"

EMEN2 Dependencies

To run the EMEN2 server, Berkeley DB, bsddb3, and dateutil are required for basic functionality. If you want to run the web server, you will also need Twisted, Markdown, Mako, and jsonrpc. Additional server features, such as thumbnails and image analysis, are provided by EMAN2 and ImageMagick.

Please note that we include all the EMEN2 dependencies listed below in the EMAN2 binary distribution. This is the recommended way to install and use EMEN2. See EMAN2 for information about EMAN2.

See EMEN2/Install for instructions on installing EMEN2 once all dependencies are installed.

Python Environment

Core Database

Web Server

Web Server: Optional

EMEN2/Dependencies (last edited 2013-06-27 04:51:06 by IanRees)