Differences between revisions 4 and 30 (spanning 26 versions)

EMEN2 Dependencies

EMEN2 is dependent on several other packages. With the exception of Python, which is generally up to date and well-packaged on most systems, I recommend downloading the latest version from the project's site and installing it, or using easy_install for the package if possible. (Linux/Mac package management systems often have out of date software.)

Python 2.6+
- Note: do not use Python 3.0+
- http://www.python.org
Berkeley DB 5.0.x
- BDB is the storage and transactional backend for EMEN2
- Note: Relatively recent 4.8.2x release are probably OK as well
- http://www.oracle.com/technology/software/products/berkeley-db/index.html
bsddb3 5.0.x
- Python bindings for Berkeley DB
- Note: Relatively recent 4.8.2x release are probably OK as well
- http://www.jcea.es/programacion/pybsddb.htm
- "easy_install bsddb3"
Mako Templates (latest)
- A simple, fast templating system for Python
- http://www.makotemplates.org/
- "easy_install mako"
Twisted 10.x+
- An event-driven networking engine written in Python
- http://twistedmatrix.com/trac/
- "easy_install twisted"
Markdown
- Simplified rich-text editing
- "easy_install Markdown"

Optional

EMAN2 (recommended)
- EMAN2 is optionally used to generate browsable micrograph previews.
- http://ncmi.bcm.edu/ncmi/software/counter_222/software_86
Matplotlib (recommended)
- Plotting support
- Note: commonly installed with EMAN2
- "easy_install matplotlib"
ImageMagick (recommended)
- Thumbnail and document preview support
- Commonly installed on Linux
- http://www.imagemagick.org/
pyOpenSSL
- Network encryption
- "easy_install pyOpenSSL"

-  ⇤ ← Revision 4 as of 2010-03-29 07:54:58 → 
  Size: 671
  Editor: root
  Comment:
+   ← Revision 30 as of 2010-09-22 06:59:38 → ⇥
  Size: 1771
  Editor: root
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 1:
-python 2.6+ (not 3.0)
 http://www.python.org
+= EMEN2 Dependencies =
-Line 4:
+Line 3:
+[[EMEN2]] is dependent on several other packages. With the exception of Python, which is generally up to date and well-packaged on most systems, I recommend downloading the latest version from the project's site and installing it, or using easy_install for the package if possible. (Linux/Mac package management systems often have out of date software.)
 Line 5:
-EMAN2
 http://ncmi.bcm.edu/ncmi/software/counter_222/software_86
+ * Python 2.6+
  * Note: do not use Python 3.0+
  * http://www.python.org
-Line 8:
+Line 9:
+ * Berkeley DB 5.0.x
  * BDB is the storage and transactional backend for EMEN2
  * Note: Relatively recent 4.8.2x release are probably OK as well
  * http://www.oracle.com/technology/software/products/berkeley-db/index.html
-Line 9:
+Line 14:
-Berkeley DB 4.8.24+
 http://www.oracle.com/technology/software/products/berkeley-db/index.html
+ * bsddb3 5.0.x
  * Python bindings for Berkeley DB
  * Note: Relatively recent 4.8.2x release are probably OK as well  
  * http://www.jcea.es/programacion/pybsddb.htm
  * "easy_install bsddb3"
-Line 12:
+Line 20:
+ * Mako Templates (latest)
  * A simple, fast templating system for Python
  * http://www.makotemplates.org/ 
  * "easy_install mako"
-Line 13:
+Line 25:
-bsddb3 4.8.4+
 python bindings for berkeley db -- latest version from http://www.jcea.es/programacion/pybsddb.htm
 "easy_install bsddb3"
+ * Twisted 10.x+
  * An event-driven networking engine written in Python
  * http://twistedmatrix.com/trac/ 
  * "easy_install twisted"
-Line 17:
+Line 30:
+ * Markdown
  * Simplified rich-text editing
  * "easy_install Markdown"
-Line 18:
+Line 34:
-Mako Templates
 http://www.makotemplates.org/
 "easy_install makotemplates"
+== Optional ==
-Line 22:
+Line 36:
+ * EMAN2 (recommended)
  * EMAN2 is optionally used to generate browsable micrograph previews.
  * http://ncmi.bcm.edu/ncmi/software/counter_222/software_86
-Line 23:
+Line 40:
-demjson
 http://deron.meranda.us/python/demjson/
 "easy_install demjson"
+ * Matplotlib (recommended)
  * Plotting support
  * Note: commonly installed with EMAN2
  * "easy_install matplotlib"
-Line 27:
+Line 45:
+ * ImageMagick (recommended)
  * Thumbnail and document preview support
  * Commonly installed on Linux
  * http://www.imagemagick.org/
-Line 28:
+Line 50:
-Twisted
 http://twistedmatrix.com/trac/
 "easy_install twisted"


yaml
 "easy_install yaml"


pyOpenSSL
 "easy_install pyOpenSSL"
+ * pyOpenSSL
  * Network encryption 
  * "easy_install pyOpenSSL"