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EMEN2 requires the following packages to be installed: = EMEN2 Dependencies =
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* Python 2.6+ (not 3.0)
 http://www.python.org
To run the EMEN2 server, Berkeley DB, bsddb3, and dateutil are required for basic functionality. If you want to run the web server, you will also need Twisted, Markdown, Mako, and jsonrpc. Additional server features, such as thumbnails and image analysis, are provided by EMAN2 and ImageMagick.

Please note that we include all the EMEN2 dependencies listed below in the EMAN2 binary distribution. This is the recommended way to install and use EMEN2. See [[EMAN2]] for information about EMAN2.

See [[EMEN2/Install]] for instructions on installing EMEN2 once all dependencies are installed.

== Python Environment ==

 * Python 2.6 or 2.7
  * Note: do not use Python 3.0+
  * http://www.python.org
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* Berkeley DB 4.8.24+
 BDB is the storage and transactional backend for EMEN2
 http://www.oracle.com/technology/software/products/berkeley-db/index.html
== Core Database ==

 * Berkeley DB 5.x+
  * BDB is the storage and transactional backend for EMEN2
  * Note: Relatively recent 4.8.2x release are probably OK as well
  * http://www.oracle.com/technology/software/products/berkeley-db/index.html

 * bsddb3 5.x+
  * Python bindings for Berkeley DB
  * Note: Relatively recent 4.8.2x release are probably OK as well
  * http://www.jcea.es/programacion/pybsddb.htm
  * "easy_install bsddb3"

 * dateutil
  * A library for accurate manipulation of dates and times
  * http://labix.org/python-dateutil
  * "easy_install dateutil"

== Web Server ==

 * Mako Templates (latest)
  * A simple, fast templating system for Python
  * http://www.makotemplates.org/
  * "easy_install mako"

 * Twisted 10.x+
  * An event-driven networking engine written in Python
  * http://twistedmatrix.com/trac/
  * "easy_install twisted"

 * Markdown
  * Simplified rich-text editing
  * "easy_install Markdown"

 * JSONRPC
  * http://pypi.python.org/pypi/jsonrpc
  * "easy_install jsonrpc"
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* bsddb3 4.8.4+ (latest)
 Python bindings for Berkeley DB
 http://www.jcea.es/programacion/pybsddb.htm
 "easy_install bsddb3"
== Web Server: Optional ==
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 * EMAN2 (highly recommended)
  * EMAN2 is optionally used to generate browsable micrograph previews.
  * http://ncmi.bcm.edu/ncmi/software/counter_222/software_86
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* Mako Templates (latest)
 A simple, fast templating system for Python
 http://www.makotemplates.org/
 "easy_install makotemplates"
 * ImageMagick (recommended)
  * Thumbnail and document preview support for "normal" image formats (jpg, png, etc.)
  * Commonly installed on Linux
  * http://www.imagemagick.org/
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* demjson (latest)
 A fast, compliant JSON module
 http://deron.meranda.us/python/demjson/
 "easy_install demjson"
 * note: EMEN2 may use the Python json standard library in the future


* Twisted 10.x+
 An event-driven networking engine written in Python
 http://twistedmatrix.com/trac/
 "easy_install twisted"


* PyYAML (latest)
 Configuration file is YAML-based
 "easy_install yaml"


* pyOpenSSL
 Network encryption
 "easy_install pyOpenSSL"


* EMAN2
 EMAN2 is optionally used to generate browsable micrograph previews.
 http://ncmi.bcm.edu/ncmi/software/counter_222/software_86
 * pyOpenSSL
  * Network encryption
  * "easy_install pyOpenSSL"

EMEN2 Dependencies

To run the EMEN2 server, Berkeley DB, bsddb3, and dateutil are required for basic functionality. If you want to run the web server, you will also need Twisted, Markdown, Mako, and jsonrpc. Additional server features, such as thumbnails and image analysis, are provided by EMAN2 and ImageMagick.

Please note that we include all the EMEN2 dependencies listed below in the EMAN2 binary distribution. This is the recommended way to install and use EMEN2. See EMAN2 for information about EMAN2.

See EMEN2/Install for instructions on installing EMEN2 once all dependencies are installed.

Python Environment

Core Database

Web Server

Web Server: Optional

EMEN2/Dependencies (last edited 2013-06-27 04:51:06 by IanRees)